diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 00000000..68db7961 Binary files /dev/null and b/.DS_Store differ diff --git a/DESCRIPTION b/DESCRIPTION index ec101bb9..9a948c17 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -16,7 +16,8 @@ Authors@R: c( comment = c(ORCID = "0000-0002-9838-7308")) ) Maintainer: Maarten Marsman -Description: Bayesian variable selection methods for analyzing the structure of a Markov Random Field model for a network of binary and/or ordinal variables. Details of the implemented methods can be found in: Marsman, van den Bergh, and Haslbeck (in press) . +Description: Bayesian variable selection methods for analyzing the structure of a Markov Random Field model for a network of binary and/or ordinal variables. Details of the implemented methods can be found in: Marsman, van den Bergh, and Haslbeck (in press) . +Copyright: Includes datasets 'ADHD' and 'Boredom', which are licensed under CC-BY 4. See individual data documentation for license and citation. License: GPL (>= 2) URL: https://Bayesian-Graphical-Modelling-Lab.github.io/bgms/ BugReports: https://github.com/Bayesian-Graphical-Modelling-Lab/bgms/issues diff --git a/R/datasets.R b/R/datasets.R index 2d49f766..bbf9ef55 100644 --- a/R/datasets.R +++ b/R/datasets.R @@ -1,36 +1,36 @@ #' Post-traumatic stress disorder symptoms of Wenchuan earthquake survivors #' -#' A data set containing items measuring symptoms of posttraumatic stress -#' disorder (PTSD) \insertCite{McNallyEtAl_2015}{bgms}. Participants were 362 -#' Chinese adults who survived the Wenchuan earthquake and lost at least one -#' child in the disaster. PTSD symptoms were reported using the civilian version -#' of the Posttraumatic Checklist, which consists of 17 items, each assessing -#' one of the DSM-IV symptoms of PTSD. Participants rated each item on a -#' five-point scale ranging from ``not at all'' to ``extremely'' to indicate how -#' much the symptom bothered them in the past month. -#' +#' A data set containing items measuring symptoms of posttraumatic stress +#' disorder (PTSD) \insertCite{McNallyEtAl_2015}{bgms}. Participants were 362 +#' Chinese adults who survived the Wenchuan earthquake and lost at least one +#' child in the disaster. PTSD symptoms were reported using the civilian version +#' of the Posttraumatic Checklist, which consists of 17 items, each assessing +#' one of the DSM-IV symptoms of PTSD. Participants rated each item on a +#' five-point scale ranging from "not at all" to "extremely" to indicate how +#' much the symptom bothered them in the past month. +#' #' @format A matrix with 362 rows and 17 columns: #' \describe{ -#' \item{intrusion}{Repeated, disturbing memories, thoughts, or images of a +#' \item{intrusion}{Repeated, disturbing memories, thoughts, or images of a #' stressful experience from the past?} -#' \item{dreams}{Repeated, disturbing dreams of a stressful experience from +#' \item{dreams}{Repeated, disturbing dreams of a stressful experience from #' the past?} -#' \item{flash}{Suddenly acting or feeling as if a stressful experience were +#' \item{flash}{Suddenly acting or feeling as if a stressful experience were #' happening again (as if you were reliving it)?} -#' \item{upset}{Feeling very upset when something reminded you of a stressful +#' \item{upset}{Feeling very upset when something reminded you of a stressful #' experience from the past?} -#' \item{physior}{Having physical reactions (e.g., heart pounding, trouble -#' breathing, sweating) when something reminded you of a stressful experience +#' \item{physior}{Having physical reactions (e.g., heart pounding, trouble +#' breathing, sweating) when something reminded you of a stressful experience #' from the past?} -#' \item{avoidth}{Avoiding thinking about or talking about a stressful +#' \item{avoidth}{Avoiding thinking about or talking about a stressful #' experience from the past or avoiding having feelings related to it?} -#' \item{avoidact}{Avoiding activities or situations because they reminded you +#' \item{avoidact}{Avoiding activities or situations because they reminded you #' of a stressful experience from the past?} -#' \item{amnesia}{Trouble remembering important parts of a stressful +#' \item{amnesia}{Trouble remembering important parts of a stressful #' experience from the past?} #' \item{lossint}{Loss of interest in activities that you used to enjoy?} #' \item{distant}{Feeling distant or cut off from other people?} -#' \item{numb}{Feeling emotionally numb or being unable to have loving +#' \item{numb}{Feeling emotionally numb or being unable to have loving #' feelings for those close to you?} #' \item{future}{Feeling as if your future will somehow be cut short?} #' \item{sleep}{Trouble falling or staying asleep?} @@ -39,7 +39,7 @@ #' \item{hyper}{Being "super-alert" or watchful or on guard?} #' \item{startle}{Feeling jumpy or easily startled?} #' } -#' +#' #' @source \url{http://psychosystems.org/wp-content/uploads/2014/10/Wenchuan.csv} #' #' @docType data @@ -55,3 +55,112 @@ #' \insertAllCited{} #' NULL + +#' ADHD symptoms of children aged 6-8 years +#' +#' A data set containing items measuring symptoms of attention deficit +#' hyperactivity disorder (ADHD) \insertCite{Silk_2019_ADHD}{bgms} +#' Participants are a subsample from a community cohort, the Children's Attention +#' Project (CAP); 355 children, aged 6-8 years, of which 146 were diagnosed with +#' ADHD and 209 were not. ADHD symptoms were assessed during structured +#' face-to-face interviews with the children's parents. The NIMH Diagnostic +#' Interview Schedule for Children IV-DISC-iV \insertCite{Shaffer_2000_nimh}{bgms} +#' contains a total of 18 symptoms, of which 9 Inattentive and 9 +#' Hyperactive/Impulsive. Each symptom was scored as either present (1) or +#' absent (0), based on the parents' statements. +#' +#' @format A matrix with 355 rows and 19 columns. (I) and (HI) indicate Inattentive +#' and Hyperactive/Impulsive symptoms, respectively. +#' \describe{ +#' \item{group}{1 = ADHD diagnosis, 0 = no ADHD diagnosis} +#' \item{avoid}{Often avoids, dislikes, or is reluctant to engage in tasks +#' that require sustained mental effort (I)} +#' \item{closeatt}{Often fails to give close attention to details or makes +#' careless mistakes in schoolwork, work, or other activities (I)} +#' \item{distract}{Is often easily distracted by extraneous stimuli (I)} +#' \item{forget}{Is often forgetful in daily activities (I)} +#' \item{instruct}{Often does not follow through on instructions and fails to +#' finish schoolwork, chores, or duties in the workplace (I)} +#' \item{listen}{Often does not seem to listen when spoken to directly +#' (I)} +#' \item{loses}{Often loses things necessary for tasks or activities (I)} +#' \item{org}{Often has difficulty organizing tasks and activities (I)} +#' \item{susatt}{Often has difficulty sustaining attention in tasks or play +#' activities (I)} +#' \item{blurts}{Often blurts out answers before questions have been completed +#' (HI)} +#' \item{fidget}{Often fidgets with hands or feet or squirms in seat +#' (HI)} +#' \item{interrupt}{Often interrupts or intrudes on others (HI)} +#' \item{motor}{Is often "on the go" or often acts as if "driven by a motor" +#' (HI)} +#' \item{quiet}{Often has difficulty playing or engaging in leisure activities +#' quietly (HI)} +#' \item{runs}{Often runs about or climbs excessively in situations in which +#' it is inappropriate (HI)} +#' \item{seat}{Often leaves seat in classroom or in other situations in which +#' remaining seated is expected (HI)} +#' \item{talks}{Often talks excessively (HI)} +#' \item{turn}{Often has difficulty awaiting turn (HI)} +#' } +#' +#' @source \insertCite{Silk_2019_ADHD;textual}{bgms}. Data retrieved from \url{https://doi.org/10.1371/journal.pone.0211053.s004}. +#' Licensed under the Creative Commons Attribution 4.0 International License (CC-BY 4.0). https://creativecommons.org/licenses/by/4.0/ +#' +#' @docType data +#' +#' @keywords datasets +#' +#' @name ADHD +#' +#' @usage data("ADHD") +#' +#' @references +#' +#' \insertAllCited{} +#' +NULL + +#' Items measuring boredom proneness +#' +#' A dataset containing items measuring proneness to boredom. The dataset is a +#' subset of the data from \insertCite{Martarelli_2023_Boredom;textual}{bgms}, +#' and contains the 8 items from the Short Boredom Proneness Scale (SBPS). Each +#' item was scored on a 7-point Likert scale ranging from 1 ("strongly disagree") +#' to 7 ("strongly agree"). The SBPS was administered either in English (the +#' language of the original scale, by \insertCite{Struk_2015_boredom;textual}{bgms}) +#' or French (as translated by \insertCite{Martarelli_2023_Boredom;textual}{bgms}). +#' +#' @format A matrix with 986 rows and 9 columns: +#' \describe{ +#' \item{loose_ends}{I often find myself at “loose ends,” not knowing what to +#' do.} +#' \item{entertain}{I find it hard to entertain myself.} +#' \item{repetitive}{Many things I have to do are repetitive and monotonous.} +#' \item{stimulation}{It takes more stimulation to get me going than most +#' people.} +#' \item{motivated}{I don't feel motivated by most things that I do.} +#' \item{keep_interest}{In most situations, it is hard for me to find +#' something to do or see to keep me interested.} +#' \item{sit_around}{Much of the time, I just sit around doing nothing.} +#' \item{half_dead_dull}{Unless I am doing something exciting, even dangerous, +#' I feel half-dead and dull.} +#' } +#' +#' @source \insertCite{Martarelli_2023_Boredom;textual}{bgms}. Data retrieved from \url{https://osf.io/qhux8}. +#' Licensed under the Creative Commons Attribution 4.0 International License (CC-BY 4.0). https://creativecommons.org/licenses/by/4.0/ +#' +#' +#' @docType data +#' +#' @keywords datasets +#' +#' @name Boredom +#' +#' @usage data("Boredom") +#' +#' @references +#' +#' \insertAllCited{} +#' +NULL diff --git a/data/.DS_Store b/data/.DS_Store new file mode 100644 index 00000000..66785f17 Binary files /dev/null and b/data/.DS_Store differ diff --git a/data/ADHD.rda b/data/ADHD.rda new file mode 100644 index 00000000..863ef6f6 Binary files /dev/null and b/data/ADHD.rda differ diff --git a/data/Boredom.rda b/data/Boredom.rda new file mode 100644 index 00000000..ed4ae7ea Binary files /dev/null and b/data/Boredom.rda differ diff --git a/inst/.DS_Store b/inst/.DS_Store new file mode 100644 index 00000000..64d3ce08 Binary files /dev/null and b/inst/.DS_Store differ diff --git a/inst/REFERENCES.bib b/inst/REFERENCES.bib index 5ac3a054..dc2e355f 100644 --- a/inst/REFERENCES.bib +++ b/inst/REFERENCES.bib @@ -1,14 +1,11 @@ -@ARTICLE{miller2018mixture, - title={Mixture models with a prior on the number of components}, - author={Miller, Jeffrey W and Harrison, Matthew T}, - journal={Journal of the American Statistical Association}, - volume={113}, - number={521}, - pages={340--356}, - year={2018}, - doi = {10.1080/01621459.2016.1255636}, - publisher={Taylor \& Francis} -} +@article{ContrerasEtAl_2019, + author = {Contreras, A. and Nieto, I. and Valiente, C. and Espinosa, R. and Vazquez, C.}, + doi = {10.1159/000497425}, + journal = {Psychotherapy and Psychosomatics}, + pages = {71--83}, + title = {The study of psychopathology from the network analysis perspective: {A} systematic review.}, + volume = {88}, + year = {2019}} @article{Dahl2009, author = {David B. Dahl}, @@ -32,22 +29,14 @@ @article{GengEtAl_2019 doi = {10.1080/01621459.2018.1458618}, year={2019}} -@article{SekulovskiEtAl_2024, - author = {Sekulovski, N. and Keetelaar, S. and Huth, K. B. S. and Wagenmakers, Eric-Jan and {van }Bork, R. and {van den }Bergh, D. and Marsman, M.}, - doi = {10.1080/00273171.2024.2345915}, - journal = {Multivariate Behavioral Research}, - pages = {913--933}, - title = {Testing conditional independence in psychometric networks: {A}n analysis of three {B}ayesian methods}, - volume = {59}, - year = {2024}, - bdsk-url-1 = {https://doi.org/10.1080/00273171.2024.2345915}} - -@book{Lauritzen2004, - address = {Oxford}, - author = {Lauritzen, {S. L.}.}, - publisher = {Oxford University Press}, - title = {Graphical Models}, - year = {2004}} +@article{HuthEtAl_2023_intro, + author = {Huth, K. and {de Ron}, J. and Goudriaan, A. E. and Luigjes, K. and Mohammadi, R. and {van Holst}, R. J. and Wagenmakers, {E.-J.} and Marsman, M.}, + journal = {Advances in {M}ethods and {P}ractices in {P}sychological {S}cience}, + title = {Bayesian analysis of cross-sectional networks: {A} tutorial in {R} and {JASP}}, + volume = {6}, + pages = {1--18}, + doi = {10.1177/25152459231193334}, + year = {2023}} @book{KindermannSnell1980, address = {Providence}, @@ -58,14 +47,25 @@ @book{KindermannSnell1980 volume = {1}, year = {1980}} -@article{ContrerasEtAl_2019, - author = {Contreras, A. and Nieto, I. and Valiente, C. and Espinosa, R. and Vazquez, C.}, - doi = {10.1159/000497425}, - journal = {Psychotherapy and Psychosomatics}, - pages = {71--83}, - title = {The study of psychopathology from the network analysis perspective: {A} systematic review.}, - volume = {88}, - year = {2019}} +@book{Lauritzen2004, + address = {Oxford}, + author = {Lauritzen, {S. L.}.}, + publisher = {Oxford University Press}, + title = {Graphical Models}, + year = {2004}} + +@article{Martarelli_2023_Boredom, + title={A Trait-Based Network Perspective on the Validation of the French Short Boredom Proneness Scale}, + author={Martarelli, Chiara S. and Baillifard, Alexandre and Audrin, Catherine}, + journal={European Journal of Psychological Assessment}, + volume={39}, + number={6}, + pages={390--399}, + year={2023}, + month={Nov}, + doi={10.1027/1015-5759/a000718}, + publisher={Hogrefe} +} @article{MarsmanRhemtulla_2022_SIintro, author = {Marsman, M. and Rhemtulla, M.}, @@ -76,24 +76,6 @@ @article{MarsmanRhemtulla_2022_SIintro volume = {87}, year = {2022}} -@article{RobinaughEtAl_2020, - author = {Robinaugh, D. J. and Hoekstra, R. H. A. and Toner, E. R. and Borsboom, D.}, - doi = {10.1017/S0033291719003404}, - journal = {Psychological Medicine}, - pages = {353--366}, - title = {The network approach to psychopathology: {A} review of the literature 2008--2018 and an agenda for future research}, - volume = {50}, - year = {2020}} - -@article{McNallyEtAl_2015, - author = {{McNally}, R. J. and Robinaugh, D. J. and Wu, G. W. Y. and Wang, L. and Deserno, M. K. and Borsboom, D.}, - doi = {10.1177/2167702614553230}, - journal = {Clinical Psychological Science}, - volume = {6}, - pages = {836--849}, - title = {Mental disorders as causal systems: {A} network approach to posttraumatic stress disorder}, - year = {2015}} - @article{MarsmanVandenBerghHaslbeck_2024, author = {Marsman, M. and {van den} Bergh, D. and Haslbeck, J. M. B.}, journal = {Psychometrika}, @@ -107,14 +89,45 @@ @article{MarsmanWaldorpSekulovskiHaslbeck_2024 note = {OSF preprint}, year = {2024}} -@article{HuthEtAl_2023_intro, - author = {Huth, K. and {de Ron}, J. and Goudriaan, A. E. and Luigjes, K. and Mohammadi, R. and {van Holst}, R. J. and Wagenmakers, {E.-J.} and Marsman, M.}, - journal = {Advances in {M}ethods and {P}ractices in {P}sychological {S}cience}, - title = {Bayesian analysis of cross-sectional networks: {A} tutorial in {R} and {JASP}}, +@article{McNallyEtAl_2015, + author = {{McNally}, R. J. and Robinaugh, D. J. and Wu, G. W. Y. and Wang, L. and Deserno, M. K. and Borsboom, D.}, + doi = {10.1177/2167702614553230}, + journal = {Clinical Psychological Science}, volume = {6}, - pages = {1--18} - doi = {10.1177/25152459231193334}, - year = {2023}} + pages = {836--849}, + title = {Mental disorders as causal systems: {A} network approach to posttraumatic stress disorder}, + year = {2015}} + +@article{Miller2018mixture, + title={Mixture models with a prior on the number of components}, + author={Miller, Jeffrey W and Harrison, Matthew T}, + journal={Journal of the American Statistical Association}, + volume={113}, + number={521}, + pages={340--356}, + year={2018}, + doi = {10.1080/01621459.2016.1255636}, + publisher={Taylor \& Francis} +} + +@article{RobinaughEtAl_2020, + author = {Robinaugh, D. J. and Hoekstra, R. H. A. and Toner, E. R. and Borsboom, D.}, + doi = {10.1017/S0033291719003404}, + journal = {Psychological Medicine}, + pages = {353--366}, + title = {The network approach to psychopathology: {A} review of the literature 2008--2018 and an agenda for future research}, + volume = {50}, + year = {2020}} + +@article{SekulovskiEtAl_2024, + author = {Sekulovski, N. and Keetelaar, S. and Huth, K. B. S. and Wagenmakers, Eric-Jan and {van }Bork, R. and {van den }Bergh, D. and Marsman, M.}, + doi = {10.1080/00273171.2024.2345915}, + journal = {Multivariate Behavioral Research}, + pages = {913--933}, + title = {Testing conditional independence in psychometric networks: {A}n analysis of three {B}ayesian methods}, + volume = {59}, + year = {2024}, + bdsk-url-1 = {https://doi.org/10.1080/00273171.2024.2345915}} @article{SekulovskiEtAl_2025, author = {Sekulovski, N. and Arena, G. and Friel, N. and Marsman, M.}, @@ -123,3 +136,38 @@ @article{SekulovskiEtAl_2025 note = {OSF preprint}, year = {2025}} +@article{Shaffer_2000_nimh, + title={NIMH Diagnostic Interview Schedule for Children Version IV (NIMH DISC-IV): description, differences from previous versions, and reliability of some common diagnoses}, + author={Shaffer, David and Fisher, Peter and Lucas, Christopher P. and Dulcan, Mina K. and Schwab-Stone, Mary E.}, + journal={Journal of the American Academy of Child \& Adolescent Psychiatry}, + volume={39}, + pages={28--38}, + year={2000}, + doi={10.1097/00004583-200001000-00014}, + publisher={Elsevier}, + note={PMID: 10638065} +} + +@article{Silk_2019_ADHD, + title={A network analysis approach to ADHD symptoms: More than the sum of its parts}, + author={Silk, Timothy J. and Malpas, Charles B. and Beare, Richard and Efron, Daryl and Anderson, Vicki and Hazell, Philip and Jongeling, Ben and Nicholson, Jan M. and Sciberras, Emma}, + journal={PLOS ONE}, + volume={14}, + number={1}, + pages={e0211053}, + year={2019}, + doi={10.1371/journal.pone.0211053}, + publisher={Public Library of Science} +} + +@article{Struk_2015_boredom, + title={A Short Boredom Proneness Scale: Development and Psychometric Properties}, + author={Struk, Anastasia A. and Carriere, Jonathan S. A. and Cheyne, J. Allan and Danckert, James}, + journal={Assessment}, + volume={24}, + number={3}, + pages={346--359}, + year={2015}, + doi={10.1177/1073191115609996}, + publisher={SAGE Publications} +} diff --git a/man/ADHD.Rd b/man/ADHD.Rd new file mode 100644 index 00000000..23949fe3 --- /dev/null +++ b/man/ADHD.Rd @@ -0,0 +1,65 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/datasets.R +\docType{data} +\name{ADHD} +\alias{ADHD} +\title{ADHD symptoms of children aged 6-8 years} +\format{ +A matrix with 355 rows and 19 columns. (I) and (HI) indicate Inattentive +and Hyperactive/Impulsive symptoms, respectively. +\describe{ + \item{group}{1 = ADHD diagnosis, 0 = no ADHD diagnosis} + \item{avoid}{Often avoids, dislikes, or is reluctant to engage in tasks + that require sustained mental effort (I)} + \item{closeatt}{Often fails to give close attention to details or makes + careless mistakes in schoolwork, work, or other activities (I)} + \item{distract}{Is often easily distracted by extraneous stimuli (I)} + \item{forget}{Is often forgetful in daily activities (I)} + \item{instruct}{Often does not follow through on instructions and fails to + finish schoolwork, chores, or duties in the workplace (I)} + \item{listen}{Often does not seem to listen when spoken to directly + (I)} + \item{loses}{Often loses things necessary for tasks or activities (I)} + \item{org}{Often has difficulty organizing tasks and activities (I)} + \item{susatt}{Often has difficulty sustaining attention in tasks or play + activities (I)} + \item{blurts}{Often blurts out answers before questions have been completed + (HI)} + \item{fidget}{Often fidgets with hands or feet or squirms in seat + (HI)} + \item{interrupt}{Often interrupts or intrudes on others (HI)} + \item{motor}{Is often "on the go" or often acts as if "driven by a motor" + (HI)} + \item{quiet}{Often has difficulty playing or engaging in leisure activities + quietly (HI)} + \item{runs}{Often runs about or climbs excessively in situations in which + it is inappropriate (HI)} + \item{seat}{Often leaves seat in classroom or in other situations in which + remaining seated is expected (HI)} + \item{talks}{Often talks excessively (HI)} + \item{turn}{Often has difficulty awaiting turn (HI)} +} +} +\source{ +\insertCite{Silk_2019_ADHD;textual}{bgms}. Data retrieved from \url{https://doi.org/10.1371/journal.pone.0211053.s004}. +Licensed under the Creative Commons Attribution 4.0 International License (CC-BY 4.0). https://creativecommons.org/licenses/by/4.0/ +} +\usage{ +data("ADHD") +} +\description{ +A data set containing items measuring symptoms of attention deficit +hyperactivity disorder (ADHD) \insertCite{Silk_2019_ADHD}{bgms} +Participants are a subsample from a community cohort, the Children's Attention +Project (CAP); 355 children, aged 6-8 years, of which 146 were diagnosed with +ADHD and 209 were not. ADHD symptoms were assessed during structured +face-to-face interviews with the children's parents. The NIMH Diagnostic +Interview Schedule for Children IV-DISC-iV \insertCite{Shaffer_2000_nimh}{bgms} +contains a total of 18 symptoms, of which 9 Inattentive and 9 +Hyperactive/Impulsive. Each symptom was scored as either present (1) or +absent (0), based on the parents' statements. +} +\references{ +\insertAllCited{} +} +\keyword{datasets} diff --git a/man/Boredom.Rd b/man/Boredom.Rd new file mode 100644 index 00000000..475a5402 --- /dev/null +++ b/man/Boredom.Rd @@ -0,0 +1,43 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/datasets.R +\docType{data} +\name{Boredom} +\alias{Boredom} +\title{Items measuring boredom proneness} +\format{ +A matrix with 986 rows and 9 columns: +\describe{ + \item{loose_ends}{I often find myself at “loose ends,” not knowing what to + do.} + \item{entertain}{I find it hard to entertain myself.} + \item{repetitive}{Many things I have to do are repetitive and monotonous.} + \item{stimulation}{It takes more stimulation to get me going than most + people.} + \item{motivated}{I don't feel motivated by most things that I do.} + \item{keep_interest}{In most situations, it is hard for me to find + something to do or see to keep me interested.} + \item{sit_around}{Much of the time, I just sit around doing nothing.} + \item{half_dead_dull}{Unless I am doing something exciting, even dangerous, + I feel half-dead and dull.} +} +} +\source{ +\insertCite{Martarelli_2023_Boredom;textual}{bgms}. Data retrieved from \url{https://osf.io/qhux8}. +Licensed under the Creative Commons Attribution 4.0 International License (CC-BY 4.0). https://creativecommons.org/licenses/by/4.0/ +} +\usage{ +data("Boredom") +} +\description{ +A dataset containing items measuring proneness to boredom. The dataset is a +subset of the data from \insertCite{Martarelli_2023_Boredom;textual}{bgms}, +and contains the 8 items from the Short Boredom Proneness Scale (SBPS). Each +item was scored on a 7-point Likert scale ranging from 1 ("strongly disagree") +to 7 ("strongly agree"). The SBPS was administered either in English (the +language of the original scale, by \insertCite{Struk_2015_boredom;textual}{bgms}) +or French (as translated by \insertCite{Martarelli_2023_Boredom;textual}{bgms}). +} +\references{ +\insertAllCited{} +} +\keyword{datasets} diff --git a/man/Wenchuan.Rd b/man/Wenchuan.Rd index 44db0d34..59de5128 100644 --- a/man/Wenchuan.Rd +++ b/man/Wenchuan.Rd @@ -7,26 +7,26 @@ \format{ A matrix with 362 rows and 17 columns: \describe{ - \item{intrusion}{Repeated, disturbing memories, thoughts, or images of a + \item{intrusion}{Repeated, disturbing memories, thoughts, or images of a stressful experience from the past?} - \item{dreams}{Repeated, disturbing dreams of a stressful experience from + \item{dreams}{Repeated, disturbing dreams of a stressful experience from the past?} - \item{flash}{Suddenly acting or feeling as if a stressful experience were + \item{flash}{Suddenly acting or feeling as if a stressful experience were happening again (as if you were reliving it)?} - \item{upset}{Feeling very upset when something reminded you of a stressful + \item{upset}{Feeling very upset when something reminded you of a stressful experience from the past?} - \item{physior}{Having physical reactions (e.g., heart pounding, trouble - breathing, sweating) when something reminded you of a stressful experience + \item{physior}{Having physical reactions (e.g., heart pounding, trouble + breathing, sweating) when something reminded you of a stressful experience from the past?} - \item{avoidth}{Avoiding thinking about or talking about a stressful + \item{avoidth}{Avoiding thinking about or talking about a stressful experience from the past or avoiding having feelings related to it?} - \item{avoidact}{Avoiding activities or situations because they reminded you + \item{avoidact}{Avoiding activities or situations because they reminded you of a stressful experience from the past?} - \item{amnesia}{Trouble remembering important parts of a stressful + \item{amnesia}{Trouble remembering important parts of a stressful experience from the past?} \item{lossint}{Loss of interest in activities that you used to enjoy?} \item{distant}{Feeling distant or cut off from other people?} - \item{numb}{Feeling emotionally numb or being unable to have loving + \item{numb}{Feeling emotionally numb or being unable to have loving feelings for those close to you?} \item{future}{Feeling as if your future will somehow be cut short?} \item{sleep}{Trouble falling or staying asleep?} @@ -43,13 +43,13 @@ A matrix with 362 rows and 17 columns: data("Wenchuan") } \description{ -A data set containing items measuring symptoms of posttraumatic stress -disorder (PTSD) \insertCite{McNallyEtAl_2015}{bgms}. Participants were 362 -Chinese adults who survived the Wenchuan earthquake and lost at least one -child in the disaster. PTSD symptoms were reported using the civilian version -of the Posttraumatic Checklist, which consists of 17 items, each assessing -one of the DSM-IV symptoms of PTSD. Participants rated each item on a -five-point scale ranging from ``not at all'' to ``extremely'' to indicate how +A data set containing items measuring symptoms of posttraumatic stress +disorder (PTSD) \insertCite{McNallyEtAl_2015}{bgms}. Participants were 362 +Chinese adults who survived the Wenchuan earthquake and lost at least one +child in the disaster. PTSD symptoms were reported using the civilian version +of the Posttraumatic Checklist, which consists of 17 items, each assessing +one of the DSM-IV symptoms of PTSD. Participants rated each item on a +five-point scale ranging from "not at all" to "extremely" to indicate how much the symptom bothered them in the past month. } \references{ diff --git a/man/bgm.Rd b/man/bgm.Rd index f35378aa..8fd99bfa 100644 --- a/man/bgm.Rd +++ b/man/bgm.Rd @@ -192,7 +192,7 @@ the Gibbs sampler for the category thresholds. \code{edge_prior = "Stochastic-Block"} a matrix \code{allocations} with the cluster assignments of the nodes from each iteration is returned. This matrix can be used to calculate the posterior probability of the number of clusters -by utilizing the \code{summary_SBM} function. +by utilizing the \code{summarySBM} function. } Column averages of these matrices provide the model-averaged posterior means. Except for the \code{allocations} matrix, for which the \code{summary_SBM}