Merge pull request #31 from Becksteinlab/update-gmx-url

Update GROMACS and NAMD repository URL in install script

Author: ljwoods2

docker/common/install_gromacs.sh

@@ -6,9 +6,9 @@ export NPROC=$(nproc)
 export LIBRARY_PATH=${CONDA_PREFIX}/lib:/usr/local/cuda/lib64
 export LD_LIBRARY_PATH=${CONDA_PREFIX}/lib:/usr/local/cuda/lib64
 
-git clone https://gitlab.com/ljwoods2/gromacs.git
+git clone https://gitlab.com/heydenlabasu/streaming-md/gromacs.git
 cd gromacs
-git checkout imd-v3
+git checkout imdv3-sans-tests
 mkdir build
 cd build
 cmake .. \

docker/namd/install_namd.sh

@@ -12,7 +12,6 @@ export NPROC=$(nproc)
 # Setup NAMD
 git clone https://oauth2:$(cat /run/secrets/NAMD_ACCESS_TOKEN)@gitlab.com/tcbgUIUC/namd.git
 cd namd
-git checkout fix_imdv3
 wget https://github.com/charmplusplus/charm/archive/refs/tags/v8.0.0.tar.gz
 tar xf v8.0.0.tar.gz
 cd charm-8.0.0
@@ -32,4 +31,4 @@ cd Linux-x86_64-g++
 make -j ${NPROC}
 
 mkdir /opt/namd-build
-mv /opt/namd/Linux-x86_64-g++/namd3 /opt/namd-build/
+mv /opt/namd/Linux-x86_64-g++/namd3 /opt/namd-build/