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Description
First, thank you for this interesting project!
While testing the example code, I found that I can consistently produce a couple visual glitches while clicking on the same node twice within transition_duration. The most common issue - nodes and their labels disappearing when clicking a node as its children are being hidden - can be seen below, produced on both your githack link and my own fork of the repository:

I have implemented a couple of exploratory workarounds for this in my own fork at bniedzie@6331114 - speeding up the transitions and preventing click() from firing often enough to cause the problem seems to avoid the above issue. Neither seems particularly elegant, but it has resolved the problem for me.
I have also found that repeatedly clicking the same node causes the view to gradually zoom in, despite the above change.
Thanks in advance for any thoughts you might have on this!