Simulate #18

	name: Simulate
	on:
	push:
	branches:
	- master
	workflow_dispatch:
	merge_group:
	schedule:
	- cron: '0 0 * * *'

	jobs:
	simulate_amici:
	runs-on: ubuntu-latest
	steps:
	- name: Check out repository
	uses: actions/checkout@v5

	- name: Prepare Python
	uses: actions/setup-python@v6
	with:
	python-version: "3.13"

	- name: Install AMICI
	env:
	AMICI_PARALLEL_COMPILE: ""
	run: \|
	pip install --upgrade pip
	# TODO: once amici 1.0 is released, replace with:
	# pip install amici[petab]
	pip install petab
	pip install "git+https://github.com/dweindl/amici.git@6a85422ad233fc268fb71272bba39f5b82db387a#egg=amici&subdirectory=python/sdist"

	- name: Simulate with nominal parameters
	env:
	AMICI_PARALLEL_COMPILE: ""
	run: \|
	for problem in `ls -1 Benchmark-Models/`; do
	python src/python/simulate.py "$problem" -j
	echo
	echo
	done

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