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fix information about paper figures
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Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure1.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig1A MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A
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Fig1A MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad4 S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A
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Fig1B MeanAndSD Smad2/3 isoform abundance LinePlot time [min] lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 time 0 0 isoform_abundance fig1, B

Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure2.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S2IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset1 fig2, D, right
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Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S2IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset2 fig2, D, right
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Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S2IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset3 fig2, D, right

Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_1.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig3F_Ski_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1 fig3, F
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Fig3F_Ski_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1_tgf fig3, F
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Fig3F_Skil_1 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression1 fig3, F

Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_2.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig3F_Ski_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2 fig3, F
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Fig3F_Ski_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2_tgf fig3, F
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Fig3F_Skil_2 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression2 fig3, F

Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_3.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig3F_Ski_3 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression3 fig3, F
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Fig3F_Ski_3 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression3_tgf fig3, F
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Fig3F_Skil_3 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression3 fig3, F

Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_4.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig3F_Ski_4 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression4 fig3, F
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Fig3F_Ski_4 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression4_tgf fig3, F
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Fig3F_Skil_4 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression4 fig3, F

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