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update nominal parameters with estimated values
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‎Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/parameters_Fiedler_BMCSystBiol2016.tsv‎

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parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate
2-
k11_k10 k_{1,1}/k{1,0} log10 1E-04 1E02 1 1
3-
tau1 \tau_{1} log10 1E-04 1E02 0.242822010781068 1
4-
tau2 \tau_{2} log10 1E-04 1E02 0.021140927521636 1
5-
K1_ERK0 K_1/[ERK]_0 log10 1E-04 1E02 1 1
6-
k11 k_{1,1} log10 1E-04 1E02 1 1
7-
k2 k_2 log10 1E-04 1E02 1 1
8-
K2 K_2 log10 1E-04 1E02 1 1
9-
k3_Raf0 k_3[Raf]_0 log10 1E-04 1E02 1 1
10-
k4 k_4 log10 1E-04 1E02 1 1
11-
K3 K_3 log10 1E-04 1E02 1 1
12-
k5_MEK0 k_5[MEK]_0 log10 1E-04 1E02 1 1
13-
k6 k_6 log10 1E-04 1E02 1 1
14-
s_pMek_rel_20140430_gel1 s_{pMek_rel,20140430,gel1} log10 1E-04 1E02 77.7404398920619 1
15-
s_pMek_rel_20140430_gel2 s_{pMek_rel,20140430,gel2} log10 1E-04 1E02 404.217160578548 1
16-
s_pMek_rel_20140505_gel1 s_{pMek_rel,20140505,gel1} log10 1E-04 1E02 392.45653075379 1
17-
s_pMek_rel_20140505_gel2 s_{pMek_rel,20140505,gel2} log10 1E-04 1E02 999.992845715073 1
18-
s_pErk_rel_20140430_gel1 s_{pErk_rel,20140430,gel1} log10 1E-04 1E02 0.369256805232789 1
19-
s_pErk_rel_20140430_gel2 s_{pErk_rel,20140430,gel2} log10 1E-04 1E02 0.250134156378628 1
20-
s_pErk_rel_20140505_gel1 s_{pErk_rel,20140505,gel1} log10 1E-04 1E02 8.92600078593847 1
21-
s_pErk_rel_20140505_gel2 s_{pErk_rel,20140505,gel2} log10 1E-04 1E02 2.85637035018243 1
22-
sigma_pMek_rel \sigma_{pMek_rel} log10 1E-10 1E02 0.000580451138215 1
23-
sigma_pErk_rel \sigma_{pErk_rel} log10 1E-10 1E02 0.045270131337451 1
2+
k11_k10 k_{1,1}/k{1,0} log10 1E-04 1E02 99.99999999999484 1
3+
tau1 \tau_{1} log10 1E-04 1E02 0.00010000000000000521 1
4+
tau2 \tau_{2} log10 1E-04 1E02 0.09288918225167495 1
5+
K1_ERK0 K_1/[ERK]_0 log10 1E-04 1E02 0.00010000000000012946 1
6+
k11 k_{1,1} log10 1E-04 1E02 26.142114172396994 1
7+
k2 k_2 log10 1E-04 1E02 1.757125014844015 1
8+
K2 K_2 log10 1E-04 1E02 1.6238964133341307 1
9+
k3_Raf0 k_3[Raf]_0 log10 1E-04 1E02 99.99999999999488 1
10+
k4 k_4 log10 1E-04 1E02 2.8508244620658574 1
11+
K3 K_3 log10 1E-04 1E02 0.8147224203594344 1
12+
k5_MEK0 k_5[MEK]_0 log10 1E-04 1E02 50.6208607696601 1
13+
k6 k_6 log10 1E-04 1E02 3.0464232664775106 1
14+
s_pMek_rel_20140430_gel1 s_{pMek_rel,20140430,gel1} log10 1E-04 1E02 9.113038276921857 1
15+
s_pMek_rel_20140430_gel2 s_{pMek_rel,20140430,gel2} log10 1E-04 1E02 40.51627466624935 1
16+
s_pMek_rel_20140505_gel1 s_{pMek_rel,20140505,gel1} log10 1E-04 1E02 46.07048727325895 1
17+
s_pMek_rel_20140505_gel2 s_{pMek_rel,20140505,gel2} log10 1E-04 1E02 99.99999999999484 1
18+
s_pErk_rel_20140430_gel1 s_{pErk_rel,20140430,gel1} log10 1E-04 1E02 0.4021713054528761 1
19+
s_pErk_rel_20140430_gel2 s_{pErk_rel,20140430,gel2} log10 1E-04 1E02 0.2576150559169624 1
20+
s_pErk_rel_20140505_gel1 s_{pErk_rel,20140505,gel1} log10 1E-04 1E02 9.945014474175611 1
21+
s_pErk_rel_20140505_gel2 s_{pErk_rel,20140505,gel2} log10 1E-04 1E02 2.93201266036779 1
22+
sigma_pMek_rel \sigma_{pMek_rel} log10 1E-10 1E02 0.005555731242143642 1
23+
sigma_pErk_rel \sigma_{pErk_rel} log10 1E-10 1E02 0.042968298321873856 1

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