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Lucarelli visualization (#286)
* Lucarelli visualization visualization specification * add multiple visualization files
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‎Benchmark-Models/Lucarelli_CellSystems2018/Lucarelli_CellSystems2018.yaml‎

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- observables_Lucarelli_CellSystems2018.tsv
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sbml_files:
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- model_Lucarelli_CellSystems2018.xml
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visualization_files:
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- visualizationSpecification_Lucarelli_CellSystems2018.tsv

‎Benchmark-Models/Lucarelli_CellSystems2018/measurementData_Lucarelli_CellSystems2018.tsv‎

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‎Benchmark-Models/Lucarelli_CellSystems2018/simulatedData_Lucarelli_CellSystems2018.tsv‎

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‎Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018.tsv‎

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‎Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure1.tsv‎

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig1A MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A
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Fig1A MeanAndSD Smad2/4 abundance BarPlot lin molecules/cell (x10$^4$) lin Smad4 S4IP_tS4_MSPL2_PL_PN_molecules_per_cell_hepa16_nExpID1 time 0 0 smad24_abundance fig1, A
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Fig1B MeanAndSD Smad2/3 isoform abundance LinePlot time [min] lin molecules/cell (x10$^4$) lin Smad2 S23IP_tS2_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 time 0 0 isoform_abundance fig1, B
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Fig1B MeanAndSD Smad2/3 isoform abundance LinePlot time [min] lin molecules/cell (x10$^4$) lin Smad3 S23IP_tS3_MSPL2_PL_PN_molecules_per_cell_hepa16_ratios_nExpID10 time 0 0 isoform_abundance fig1, B
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Fig1C_1 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin nSmad2 S23IP_S2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C
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Fig1C_1 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin pSmad2 S23IP_pS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C
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Fig1C_1 MeanAndSD Smad2 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin ppSmad2 S23IP_ppS2_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad2_phosphorylation fig1, C
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Fig1C_2 MeanAndSD Smad3 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin nSmad3 S23IP_S3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C
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Fig1C_2 MeanAndSD Smad3 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin pSmad3 S23IP_pS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C
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Fig1C_2 MeanAndSD Smad3 phosphorylation LinePlot time [min] lin molecules/cell (x10$^4$) lin ppSmad3 S23IP_ppS3_MSPL2_PL_hepa16_pS2_pS3_time_course_nExpID5 time 0 0 smad3_phosphorylation fig1, C
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Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad2 S2IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left
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Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad2 S2IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left
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Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad2 S2IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left
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Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad3 S2IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left
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Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad3 S2IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left
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Fig1D_1 MeanAndSD Smad2 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad3 S2IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad2IP fig1, left
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Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad3 S3IP_S3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right
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Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad3 S3IP_pS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right
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Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad3 S3IP_ppS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right
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Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin nSmad2 S3IP_S2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right
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Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin pSmad2 S3IP_pS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right
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Fig1D_2 MeanAndSD Smad3 IP BarPlot lin molecules/cell (x10$^4$) lin ppSmad2 S3IP_ppS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 time 0 0 Smad3IP fig1, right

‎Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure2.tsv‎

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S2IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset1 fig2, D, right
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Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S2IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset2 fig2, D, right
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Fig2D_right_1 MeanAndSD Smad2 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S2IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset3 fig2, D, right
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Fig2D_right_2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S3IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset4 fig2, D, right
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Fig2D_right_2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S3IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset5 fig2, D, right
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Fig2D_right_2 MeanAndSD Smad3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S3IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset6 fig2, D, right
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Fig2D_right_3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S4IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset7 fig2, D, right
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Fig2D_right_3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S4IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset8 fig2, D, right
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Fig2D_right_3 MeanAndSD Smad4 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S4IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset9 fig2, D, right
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Fig2D_right_4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad2 S23IP_tS2_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset10 fig2, D, right
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Fig2D_right_4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad3 S23IP_tS3_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset11 fig2, D, right
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Fig2D_right_4 MeanAndSD Smad2/3 IP LinePlot TGF$\beta$ (ng/ml) lin relative abundance [%] lin Smad4 S23IP_tS4_MSPL2_complexes_all_hepa16_no_single_complex_nExpID2 init_TGFb 0 0 dataset12 fig2, D, right
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Fig2D_left_1 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin Smad2 S2IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_1 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin Smad3 S2IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_1 MeanAndSD Smad2 IP LinePlot time [min] lin relative abundance [%] lin Smad4 S2IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_2 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin Smad2 S3IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_2 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin Smad3 S3IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_2 MeanAndSD Smad3 IP LinePlot time [min] lin relative abundance [%] lin Smad4 S3IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_3 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin Smad2 S4IP_tS2_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_3 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin Smad3 S4IP_tS3_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left
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Fig2D_left_3 MeanAndSD Smad4 IP LinePlot time [min] lin relative abundance [%] lin Smad4 S4IP_tS4_MSPL2_complexes_all_hepa16_time_course_nExpID6 time 0 0 fig2Dleft fig2, D, left

‎Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_1.tsv‎

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig3F_Ski_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1 fig3, F
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Fig3F_Ski_1 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression1_tgf fig3, F
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Fig3F_Skil_1 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression1 fig3, F
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Fig3F_Skil_1 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression1_tgf fig3, F
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Fig3F_Dnmt3a_1 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 untreated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression1 fig3, F
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Fig3F_Dnmt3a_1 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression1_tgf fig3, F
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Fig3F_Sox4_1 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 untreated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression1 fig3, F
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Fig3F_Sox4_1 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression1_tgf fig3, F
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Fig3F_Jun_1 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 untreated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression1 fig3, F
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Fig3F_Jun_1 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression1_tgf fig3, F
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Fig3F_Smad7_1 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 untreated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression1 fig3, F
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Fig3F_Smad7_1 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression1_tgf fig3, F
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Fig3F_Klf10_1 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 untreated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression1 fig3, F
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Fig3F_Klf10_1 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression1_tgf fig3, F
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Fig3F_Bmp4_1 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 untreated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression1 fig3, F
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Fig3F_Bmp4_1 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression1_tgf fig3, F
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Fig3F_Cxcl15_1 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 untreated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression1 fig3, F
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Fig3F_Cxcl15_1 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression1_tgf fig3, F
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Fig3F_Dusp5_1 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 untreated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression1 fig3, F
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Fig3F_Dusp5_1 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression1_tgf fig3, F
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Fig3F_Tgfa_1 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 untreated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression1 fig3, F
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Fig3F_Tgfa_1 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression1_tgf fig3, F
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Fig3F_Pdk4_1 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 untreated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression1 fig3, F
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Fig3F_Pdk4_1 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression1_tgf fig3, F

‎Benchmark-Models/Lucarelli_CellSystems2018/visualizationSpecification_Lucarelli_CellSystems2018_Figure3_2.tsv‎

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId paperFigure
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Fig3F_Ski_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 untreated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2 fig3, F
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Fig3F_Ski_2 MeanAndSD Ski LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Ski_gene_expression_OE_nExpID100 time 0 0 Ski_gene_expression2_tgf fig3, F
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Fig3F_Skil_2 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 untreated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression2 fig3, F
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Fig3F_Skil_2 MeanAndSD Skil LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Skil_gene_expression_OE_nExpID100 time 0 0 Skil_gene_expression2_tgf fig3, F
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Fig3F_Dnmt3a_2 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 untreated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression2 fig3, F
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Fig3F_Dnmt3a_2 MeanAndSD Dnmt3a LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dnmt3a_gene_expression_OE_nExpID100 time 0 0 Dnmt3a_gene_expression2_tgf fig3, F
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Fig3F_Sox4_2 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 untreated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression2 fig3, F
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Fig3F_Sox4_2 MeanAndSD Sox4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Sox4_gene_expression_OE_nExpID100 time 0 0 Sox4_gene_expression2_tgf fig3, F
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Fig3F_Jun_2 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 untreated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression2 fig3, F
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Fig3F_Jun_2 MeanAndSD Jun LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Jun_gene_expression_OE_nExpID100 time 0 0 Jun_gene_expression2_tgf fig3, F
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Fig3F_Smad7_2 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 untreated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression2 fig3, F
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Fig3F_Smad7_2 MeanAndSD Smad7 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Smad7_gene_expression_OE_nExpID100 time 0 0 Smad7_gene_expression2_tgf fig3, F
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Fig3F_Klf10_2 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 untreated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression2 fig3, F
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Fig3F_Klf10_2 MeanAndSD Klf10 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Klf10_gene_expression_OE_nExpID100 time 0 0 Klf10_gene_expression2_tgf fig3, F
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Fig3F_Bmp4_2 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 untreated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression2 fig3, F
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Fig3F_Bmp4_2 MeanAndSD Bmp4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Bmp4_gene_expression_OE_nExpID100 time 0 0 Bmp4_gene_expression2_tgf fig3, F
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Fig3F_Cxcl15_2 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 untreated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression2 fig3, F
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Fig3F_Cxcl15_2 MeanAndSD Cxcl15 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Cxcl15_gene_expression_OE_nExpID100 time 0 0 Cxcl15_gene_expression2_tgf fig3, F
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Fig3F_Dusp5_2 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 untreated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression2 fig3, F
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Fig3F_Dusp5_2 MeanAndSD Dusp5 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Dusp5_gene_expression_OE_nExpID100 time 0 0 Dusp5_gene_expression2_tgf fig3, F
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Fig3F_Tgfa_2 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 untreated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression2 fig3, F
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Fig3F_Tgfa_2 MeanAndSD Tgfa LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Tgfa_gene_expression_OE_nExpID100 time 0 0 Tgfa_gene_expression2_tgf fig3, F
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Fig3F_Pdk4_2 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 untreated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression2 fig3, F
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Fig3F_Pdk4_2 MeanAndSD Pdk4 LinePlot time [min] lin gene expression (log) log10 TGF$\beta$-treated Pdk4_gene_expression_OE_nExpID100 time 0 0 Pdk4_gene_expression2_tgf fig3, F

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