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plakrisenkoplakrisenko
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fix colum name in simulation_df (#178)
* fix colum name in simulation_df * fix file extension for Giordano simulation file * remove trailing whitespace in Brannmark_JBC2010 simulatedData
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‎Benchmark-Models/Brannmark_JBC2010/simulatedData_Brannmark_JBC2010.tsv‎

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@@ -6,18 +6,18 @@ IRS1_P_DosR Dose_0 Dose_1 48.0671566365257 10 k_IRSiP_DosR sigmaYDosR dose_respo
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IRS1_P_DosR Dose_0 Dose_3 68.8054777834928 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
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IRS1_P_DosR Dose_0 Dose_10 83.567481341805 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
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IRS1_P_DosR Dose_0 Dose_100 85.0149890438906 10 k_IRSiP_DosR sigmaYDosR dose_response insulin_dose_1
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IR1_P Dose_0 Dose_100 2.22763226881289 0 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 99.3331254449145 0.9 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 83.1108237692557 1.15 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 76.9137049972788 1.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 59.6539158908547 2.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 55.0961009395699 3.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 52.0284374778894 5.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 50.2150261365795 7 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 47.2797089543243 10 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 43.4189654446421 15 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 40.6603409656943 20 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 37.3490089527785 30 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 2.22763226881289 0 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 99.3331254449145 0.9 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 83.1108237692557 1.15 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 76.9137049972788 1.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 59.6539158908547 2.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 55.0961009395699 3.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 52.0284374778894 5.3 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 50.2150261365795 7 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 47.2797089543243 10 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 43.4189654446421 15 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 40.6603409656943 20 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IR1_P Dose_0 Dose_100 37.3490089527785 30 k_IRP_1Step sigmaY1TimR one_step_time_response time
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IRS1_P Dose_0 Dose_100 5.99870254944543 0 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
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IRS1_P Dose_0 Dose_100 220.689083467924 0.9 k_IRSiP_1Step sigmaY2TimR one_step_time_response time
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IRS1_P Dose_0 Dose_100 198.298517693265 1.15 k_IRSiP_1Step sigmaY2TimR one_step_time_response time

Benchmark-Models/Giordano_Nature2020/simulatedData_Giordano_Nature2020.csv renamed to Benchmark-Models/Giordano_Nature2020/simulatedData_Giordano_Nature2020.tsv

File renamed without changes.

Benchmark-Models/Isensee_JCB2018/simulationData_Isensee_JCB2018.tsv renamed to Benchmark-Models/Isensee_JCB2018/simulatedData_Isensee_JCB2018.tsv

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‎Benchmark-Models/Perelson_Science1996/simulatedData_Perelson_Science1996.tsv‎

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observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters observableTransformation noiseDistribution
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observableId preequilibrationConditionId simulationConditionId simulation time observableParameters noiseParameters observableTransformation noiseDistribution
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task0_model0_perelson1_V condition1 1860000 0 1 log10 normal
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task0_model0_perelson1_V condition1 1979067.19116451 0.105 1 log10 normal
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task0_model0_perelson1_V condition1 2036200.82349015 0.169 1 log10 normal

‎Benchmark-Models/Weber_BMC2015/simulatedData_Weber_BMC2015.tsv‎

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observableId preequilibrationConditionId simulationConditionId simulatedData time observableParameters noiseParameters observableTransformation
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observableId preequilibrationConditionId simulationConditionId simulation time observableParameters noiseParameters observableTransformation
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yPI4K3Bt model1_data2 80032724.6249776 24
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yPI4K3Bt model1_data2 80032724.6249776 24
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yPI4K3Bt model1_data2 80032724.6249776 24

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