diff --git a/Benchmark-Models/Sneyd_PNAS2002/Sneyd_PNAS2002.yaml b/Benchmark-Models/Sneyd_PNAS2002/Sneyd_PNAS2002.yaml index 341c2fad..d85ada99 100644 --- a/Benchmark-Models/Sneyd_PNAS2002/Sneyd_PNAS2002.yaml +++ b/Benchmark-Models/Sneyd_PNAS2002/Sneyd_PNAS2002.yaml @@ -8,4 +8,6 @@ problems: observable_files: - observables_Sneyd_PNAS2002.tsv sbml_files: - - model_Sneyd_PNAS2002.xml \ No newline at end of file + - model_Sneyd_PNAS2002.xml + visualization_files: + - visualizationSpecification_Sneyd_PNAS2002.tsv diff --git a/Benchmark-Models/Sneyd_PNAS2002/measurementData_Sneyd_PNAS2002.tsv b/Benchmark-Models/Sneyd_PNAS2002/measurementData_Sneyd_PNAS2002.tsv index a9df8769..5fee56c5 100644 --- a/Benchmark-Models/Sneyd_PNAS2002/measurementData_Sneyd_PNAS2002.tsv +++ b/Benchmark-Models/Sneyd_PNAS2002/measurementData_Sneyd_PNAS2002.tsv @@ -1,136 +1,136 @@ -observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters experimentName replicateId useData -open_probability Ca_dose_response__1 -0.01 0.0 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.113 0.07 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.065 0.14 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.037000000000000005 0.21 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.022 0.28 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.017 0.35 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.008 0.42 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.008 0.49 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.011 0.56 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.005 0.63 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.01 0.7 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.006 0.77 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.009000000000000001 0.84 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.006 0.91 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__1 0.008 0.98 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 -0.018000000000000002 0.0 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.174 0.07 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.106 0.14 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.065 0.21 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.036000000000000004 0.28 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.024 0.35 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.015 0.42 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.01 0.49 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.006999999999999999 0.56 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.005 0.63 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.006 0.7 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.008 0.77 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.005 0.84 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.017 0.91 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__2 0.015 0.98 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.008 0.0 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.327 0.07 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.297 0.14 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.189 0.21 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.121 0.28 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.084 0.35 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.057 0.42 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.047 0.49 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.04 0.56 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.039 0.63 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.036000000000000004 0.7 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.03 0.77 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.024 0.84 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.024 0.91 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__3 0.026 0.98 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.012 0.0 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.253 0.07 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.214 0.14 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.109 0.21 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.047 0.28 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.022 0.35 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.016 0.42 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.013 0.49 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.012 0.56 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.012 0.63 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.012 0.7 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.012 0.77 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.012 0.84 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.004 0.91 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__4 0.005 0.98 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.052000000000000005 0.0 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.238 0.07 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.17800000000000002 0.14 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.095 0.21 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.062 0.28 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.035 0.35 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.026 0.42 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.019 0.49 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.016 0.56 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.018000000000000002 0.63 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.008 0.7 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.005 0.77 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.01 0.84 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.011 0.91 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__5 0.006999999999999999 0.98 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.014 0.0 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.185 0.07 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.17600000000000002 0.14 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.141 0.21 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.087 0.28 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.049 0.35 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.036000000000000004 0.42 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.025 0.49 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.018000000000000002 0.56 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.012 0.63 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.014 0.7 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.009000000000000001 0.77 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.01 0.84 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.014 0.91 sigma Ca^{2+} response 1 True -open_probability Ca_dose_response__6 0.013 0.98 sigma Ca^{2+} response 1 True -open_probability IP3_dose_response__1 0.005 0.0 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.015 0.07 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.073 0.14 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.102 0.21 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.102 0.28 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.09 0.35 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.084 0.42 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.071 0.49 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.06 0.56 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.056 0.63 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.051 0.7 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.052000000000000005 0.77 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.049 0.84 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.051 0.91 sigma IP_3 response 1 True -open_probability IP3_dose_response__1 0.042 0.98 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.0 0.0 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.129 0.07 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.263 0.14 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.187 0.21 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.119 0.28 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.084 0.35 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.066 0.42 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.058 0.49 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.047 0.56 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.047 0.63 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.047 0.7 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.037000000000000005 0.77 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.033 0.84 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.027000000000000003 0.91 sigma IP_3 response 1 True -open_probability IP3_dose_response__2 0.028 0.98 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.014 0.0 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.202 0.07 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.337 0.14 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.231 0.21 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.142 0.28 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.094 0.35 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.067 0.42 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.06 0.49 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.05 0.56 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.043 0.63 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.038 0.7 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.031 0.77 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.027000000000000003 0.84 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.025 0.91 sigma IP_3 response 1 True -open_probability IP3_dose_response__3 0.026 0.98 sigma IP_3 response 1 True +observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters experimentName replicateId useData datasetId +open_probability Ca_dose_response__1 -0.01 0 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.113 0.07 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.065 0.14 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.037 0.21 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.022 0.28 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.017 0.35 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.008 0.42 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.008 0.49 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.011 0.56 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.005 0.63 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.01 0.7 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.006 0.77 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.009 0.84 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.006 0.91 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.008 0.98 sigma Ca^{2+} response 1 True Ca_dose_response__1_open_probability +open_probability Ca_dose_response__2 -0.018 0 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.174 0.07 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.106 0.14 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.065 0.21 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.036 0.28 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.024 0.35 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.015 0.42 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.01 0.49 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.007 0.56 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.005 0.63 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.006 0.7 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.008 0.77 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.005 0.84 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.017 0.91 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.015 0.98 sigma Ca^{2+} response 1 True Ca_dose_response__2_open_probability +open_probability Ca_dose_response__3 0.008 0 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.327 0.07 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.297 0.14 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.189 0.21 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.121 0.28 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.084 0.35 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.057 0.42 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.047 0.49 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.04 0.56 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.039 0.63 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.036 0.7 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.03 0.77 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.024 0.84 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.024 0.91 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.026 0.98 sigma Ca^{2+} response 1 True Ca_dose_response__3_open_probability +open_probability Ca_dose_response__4 0.012 0 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.253 0.07 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.214 0.14 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.109 0.21 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.047 0.28 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.022 0.35 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.016 0.42 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.013 0.49 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.012 0.56 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.012 0.63 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.012 0.7 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.012 0.77 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.012 0.84 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.004 0.91 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.005 0.98 sigma Ca^{2+} response 1 True Ca_dose_response__4_open_probability +open_probability Ca_dose_response__5 0.052 0 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.238 0.07 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.178 0.14 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.095 0.21 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.062 0.28 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.035 0.35 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.026 0.42 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.019 0.49 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.016 0.56 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.018 0.63 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.008 0.7 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.005 0.77 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.01 0.84 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.011 0.91 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.007 0.98 sigma Ca^{2+} response 1 True Ca_dose_response__5_open_probability +open_probability Ca_dose_response__6 0.014 0 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.185 0.07 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.176 0.14 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.141 0.21 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.087 0.28 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.049 0.35 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.036 0.42 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.025 0.49 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.018 0.56 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.012 0.63 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.014 0.7 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.009 0.77 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.01 0.84 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.014 0.91 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.013 0.98 sigma Ca^{2+} response 1 True Ca_dose_response__6_open_probability +open_probability IP3_dose_response__1 0.005 0 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.015 0.07 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.073 0.14 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.102 0.21 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.102 0.28 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.09 0.35 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.084 0.42 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.071 0.49 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.06 0.56 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.056 0.63 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.051 0.7 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.052 0.77 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.049 0.84 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.051 0.91 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.042 0.98 sigma IP_3 response 1 True IP3_dose_response__1_open_probability +open_probability IP3_dose_response__2 0 0 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.129 0.07 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.263 0.14 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.187 0.21 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.119 0.28 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.084 0.35 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.066 0.42 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.058 0.49 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.047 0.56 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.047 0.63 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.047 0.7 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.037 0.77 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.033 0.84 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.027 0.91 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.028 0.98 sigma IP_3 response 1 True IP3_dose_response__2_open_probability +open_probability IP3_dose_response__3 0.014 0 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.202 0.07 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.337 0.14 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.231 0.21 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.142 0.28 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.094 0.35 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.067 0.42 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.06 0.49 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.05 0.56 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.043 0.63 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.038 0.7 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.031 0.77 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.027 0.84 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.025 0.91 sigma IP_3 response 1 True IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.026 0.98 sigma IP_3 response 1 True IP3_dose_response__3_open_probability diff --git a/Benchmark-Models/Sneyd_PNAS2002/simulatedData_Sneyd_PNAS2002.tsv b/Benchmark-Models/Sneyd_PNAS2002/simulatedData_Sneyd_PNAS2002.tsv index 2a01a7de..79f93e26 100644 --- a/Benchmark-Models/Sneyd_PNAS2002/simulatedData_Sneyd_PNAS2002.tsv +++ b/Benchmark-Models/Sneyd_PNAS2002/simulatedData_Sneyd_PNAS2002.tsv @@ -1,136 +1,136 @@ -observableId preequilibrationConditionId simulationConditionId simulation time observableParameters noiseParameters experimentName replicateId useData -open_probability Ca_dose_response__1 0 0 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.121894546523477 0.07 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.060595553808957 0.14 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.029927743627544 0.21 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.016966738060837 0.28 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.010950865102333 0.35 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.007889935956002 0.42 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.006208795803398 0.49 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.00522799579081 0.56 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.004628767636314 0.63 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.004249773944653 0.7 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.004003778690146 0.77 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.003840913784634 0.84 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.003731366618313 0.91 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__1 0.003656677446066 0.98 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0 0 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.215678142415106 0.07 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.163761426885113 0.14 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.102217430277337 0.21 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.067586627905053 0.28 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.04794160008511 0.35 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.036246811779277 0.42 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.028958334975966 0.49 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.024232259124856 0.56 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.021063632687336 0.63 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.018879468210961 0.7 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.017339073625141 0.77 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.016231996423034 0.84 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.015423728256309 0.91 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__2 0.014825697161151 0.98 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0 0 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.261822224490706 0.07 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.243214273475024 0.14 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.165452868159381 0.21 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.114719898954169 0.28 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.083539032274217 0.35 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.063834828747858 0.42 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.05094768692273 0.49 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.042247387361814 0.56 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.036207087269719 0.63 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.031910713745902 0.7 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.028790694098721 0.77 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.02648455706322 0.84 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.02475422564705 0.91 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__3 0.023439256475873 0.98 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0 0 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.256421638211286 0.07 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.244049602963311 0.14 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.157567043658913 0.21 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.102262809203666 0.28 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.069922277704295 0.35 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.050522181826376 0.42 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.038429952523923 0.49 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.030609970408551 0.56 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.02538346521554 0.63 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.021788797300514 0.7 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.019255261437112 0.77 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.017432484512352 0.84 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.016098394582075 0.91 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__4 0.015108032006753 0.98 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0 0 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.209956782778307 0.07 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.171912802309381 0.14 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.091220598909618 0.21 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.049356198337219 0.28 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.029091174010564 0.35 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.018788457182827 0.42 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.013206212177869 0.49 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.00999556752894 0.56 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.008051163083109 0.63 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.006822135884553 0.7 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.006018101069233 0.77 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.005477684256377 0.84 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.00510679643968 0.91 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__5 0.004848188811793 0.98 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0 0 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.227499981859172 0.07 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.198777336708334 0.14 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.113821705477149 0.21 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.065924070834603 0.28 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.040993686128187 0.35 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.027509842618924 0.42 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.019820431596413 0.49 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.01520884723014 0.56 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.012317850790703 0.63 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.01043614698577 0.7 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.009172808913423 0.77 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.008303103892224 0.84 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.007692317288332 0.91 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability Ca_dose_response__6 0.007256603205075 0.98 0.022665679544462 Ca^{2+} response 1 TRUE -open_probability IP3_dose_response__1 0 0 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.261822224490706 0.07 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.243214273475024 0.14 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.165452868159381 0.21 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.114719898954169 0.28 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.083539032274217 0.35 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.063834828747858 0.42 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.05094768692273 0.49 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.042247387361814 0.56 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.036207087269719 0.63 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.031910713745902 0.7 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.028790694098721 0.77 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.02648455706322 0.84 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.02475422564705 0.91 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__1 0.023439256475873 0.98 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0 0 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.027513716704193 0.07 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.099307231943202 0.14 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.130202341702809 0.21 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.122285020707863 0.28 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.101303258567466 0.35 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.080710796039658 0.42 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.064352347846962 0.49 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.052281488561359 0.56 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.043582860721469 0.63 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.037326744571104 0.7 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.032792900371487 0.77 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.029469364593807 0.84 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.027002522397321 0.91 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__2 0.025149254710067 0.98 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0 0 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.093722639361853 0.07 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.190123164511576 0.14 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.17175740987611 0.21 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.129468384266291 0.28 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.095441173133522 0.35 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.072142226375651 0.42 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.05661310471373 0.49 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.046149533503429 0.56 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.038946262778702 0.63 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.033872579795436 0.7 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.03022216500319 0.77 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.027546187017617 0.84 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.025552684613735 0.91 0.022665679544462 IP_3 response 1 TRUE -open_probability IP3_dose_response__3 0.024047022739061 0.98 0.022665679544462 IP_3 response 1 TRUE +observableId preequilibrationConditionId simulationConditionId simulation time observableParameters noiseParameters experimentName replicateId useData datasetId +open_probability Ca_dose_response__1 0 0 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.121894546523477 0.07 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.060595553808957 0.14 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.029927743627544 0.21 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.016966738060837 0.28 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.010950865102333 0.35 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.007889935956002 0.42 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.006208795803398 0.49 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.00522799579081 0.56 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.004628767636314 0.63 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.004249773944653 0.7 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.004003778690146 0.77 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.003840913784634 0.84 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.003731366618313 0.91 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__1 0.003656677446066 0.98 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__1_open_probability +open_probability Ca_dose_response__2 0 0 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.215678142415106 0.07 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.163761426885113 0.14 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.102217430277337 0.21 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.067586627905053 0.28 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.04794160008511 0.35 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.036246811779277 0.42 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.028958334975966 0.49 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.024232259124856 0.56 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.021063632687336 0.63 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.018879468210961 0.7 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.017339073625141 0.77 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.016231996423034 0.84 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.015423728256309 0.91 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__2 0.014825697161151 0.98 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__2_open_probability +open_probability Ca_dose_response__3 0 0 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.261822224490706 0.07 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.243214273475024 0.14 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.165452868159381 0.21 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.114719898954169 0.28 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.083539032274217 0.35 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.063834828747858 0.42 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.05094768692273 0.49 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.042247387361814 0.56 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.036207087269719 0.63 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.031910713745902 0.7 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.028790694098721 0.77 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.02648455706322 0.84 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.02475422564705 0.91 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__3 0.023439256475873 0.98 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__3_open_probability +open_probability Ca_dose_response__4 0 0 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.256421638211286 0.07 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.244049602963311 0.14 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.157567043658913 0.21 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.102262809203666 0.28 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.069922277704295 0.35 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.050522181826376 0.42 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.038429952523923 0.49 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.030609970408551 0.56 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.02538346521554 0.63 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.021788797300514 0.7 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.019255261437112 0.77 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.017432484512352 0.84 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.016098394582075 0.91 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__4 0.015108032006753 0.98 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__4_open_probability +open_probability Ca_dose_response__5 0 0 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.209956782778307 0.07 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.171912802309381 0.14 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.091220598909618 0.21 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.049356198337219 0.28 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.029091174010564 0.35 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.018788457182827 0.42 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.013206212177869 0.49 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.00999556752894 0.56 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.008051163083109 0.63 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.006822135884553 0.7 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.006018101069233 0.77 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.005477684256377 0.84 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.00510679643968 0.91 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__5 0.004848188811793 0.98 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__5_open_probability +open_probability Ca_dose_response__6 0 0 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.227499981859172 0.07 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.198777336708334 0.14 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.113821705477149 0.21 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.065924070834603 0.28 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.040993686128187 0.35 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.027509842618924 0.42 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.019820431596413 0.49 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.01520884723014 0.56 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.012317850790703 0.63 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.01043614698577 0.7 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.009172808913423 0.77 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.008303103892224 0.84 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.007692317288332 0.91 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability Ca_dose_response__6 0.007256603205075 0.98 0.022665679544462 Ca^{2+} response 1 TRUE Ca_dose_response__6_open_probability +open_probability IP3_dose_response__3 0 0 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.261822224490706 0.07 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.243214273475024 0.14 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.165452868159381 0.21 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.114719898954169 0.28 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.083539032274217 0.35 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.063834828747858 0.42 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.05094768692273 0.49 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.042247387361814 0.56 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.036207087269719 0.63 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.031910713745902 0.7 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.028790694098721 0.77 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.02648455706322 0.84 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.02475422564705 0.91 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__3 0.023439256475873 0.98 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__3_open_probability +open_probability IP3_dose_response__1 0 0 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.027513716704193 0.07 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.099307231943202 0.14 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.130202341702809 0.21 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.122285020707863 0.28 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.101303258567466 0.35 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.080710796039658 0.42 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.064352347846962 0.49 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.052281488561359 0.56 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.043582860721469 0.63 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.037326744571104 0.7 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.032792900371487 0.77 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.029469364593807 0.84 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.027002522397321 0.91 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__1 0.025149254710067 0.98 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__1_open_probability +open_probability IP3_dose_response__2 0 0 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.093722639361853 0.07 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.190123164511576 0.14 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.17175740987611 0.21 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.129468384266291 0.28 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.095441173133522 0.35 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.072142226375651 0.42 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.05661310471373 0.49 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.046149533503429 0.56 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.038946262778702 0.63 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.033872579795436 0.7 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.03022216500319 0.77 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.027546187017617 0.84 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.025552684613735 0.91 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability +open_probability IP3_dose_response__2 0.024047022739061 0.98 0.022665679544462 IP_3 response 1 TRUE IP3_dose_response__2_open_probability diff --git a/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002.tsv b/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002.tsv new file mode 100644 index 00000000..814db5f9 --- /dev/null +++ b/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002.tsv @@ -0,0 +1,10 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale datasetId legendEntry yValues xValues xOffset yOffset +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__1_open_probability 10 μM IP_3, 0.1 μM Ca^{2+} - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__2_open_probability 10 μM IP_3, 0.2 μM Ca^{2+} - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__3_open_probability 10 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__4_open_probability 10 μM IP_3, 1 μM Ca^{2+} - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__5_open_probability 10 μM IP_3, 3 μM Ca^{2+} - open_probability open_probability time 0 0 +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__6_open_probability 10 μM IP_3, 10 μM Ca^{2+} - open_probability open_probability time 0 0 +plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__1_open_probability 3 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 +plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__2_open_probability 5 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 +plot2 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__3_open_probability 10 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 diff --git a/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002_subplots.tsv b/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002_subplots.tsv new file mode 100644 index 00000000..f2515585 --- /dev/null +++ b/Benchmark-Models/Sneyd_PNAS2002/visualizationSpecification_Sneyd_PNAS2002_subplots.tsv @@ -0,0 +1,10 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale datasetId legendEntry yValues xValues xOffset yOffset +plot1 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__1_open_probability 10 μM IP_3, 0.1 μM Ca^{2+} - open_probability open_probability time 0 0 +plot2 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__2_open_probability 10 μM IP_3, 0.2 μM Ca^{2+} - open_probability open_probability time 0 0 +plot3 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__3_open_probability 10 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 +plot4 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__4_open_probability 10 μM IP_3, 1 μM Ca^{2+} - open_probability open_probability time 0 0 +plot5 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__5_open_probability 10 μM IP_3, 3 μM Ca^{2+} - open_probability open_probability time 0 0 +plot6 MeanAndSD LinePlot time [s] lin open probability lin Ca_dose_response__6_open_probability 10 μM IP_3, 10 μM Ca^{2+} - open_probability open_probability time 0 0 +plot7 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__1_open_probability 3 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 +plot8 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__2_open_probability 5 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0 +plot9 MeanAndSD LinePlot time [s] lin open probability lin IP3_dose_response__3_open_probability 10 μM IP_3, 0.4 μM Ca^{2+} - open_probability open_probability time 0 0