chore: minor changes

Author: Benncs

apps/cli/src/main.cpp

@@ -150,7 +150,7 @@ int parse_callback_ok(
     return -1;
   }
   h->set_logger(std::cref(logger));
-  h->set_feed_constant(7.701635339554948e-06, 2, 0, 0);
+  // h->set_feed_constant(7.701635339554948e-06, 2, 0, 0);
   const auto load_serde = user_params.load_serde;
   INTERPRETER_INIT
   {

apps/core/src/host_specific.cpp

@@ -206,6 +206,7 @@ namespace
           PROFILE_SECTION("host:sync_update")
           simulation.update_feed(current_time, d_t);
           simulation.step(d_t);
+          // From here, contributions can be overwritten
           current_time += d_t;
         }
         sync_prepare_next(simulation);

apps/libs/models/public/models/fixed_length.hpp

@@ -46,7 +46,7 @@ namespace Models
     MODEL_CONSTANT FloatType l_dot_max = 2e-6 / 3600.; // m
     MODEL_CONSTANT FloatType l_max_m = 2e-6;           // m
     MODEL_CONSTANT FloatType l_min_m = l_max_m / 2.;   // m
-    MODEL_CONSTANT FloatType k = 1e-6;                 // m
+    MODEL_CONSTANT FloatType k = 1e-3;                 // m
     MODEL_CONSTANT FloatType d_m = 0.6e-6;             // m
     MODEL_CONSTANT FloatType lin_density =
         c_linear_density(static_cast<FloatType>(1000), d_m);
@@ -124,7 +124,7 @@ namespace Models
     const auto s = static_cast<FloatType>(c(0));
     const FloatType g = s / (k + s);
     const FloatType phi_s = phi_s_max * g;
-    const FloatType ldot = l_dot_max * static_cast<FloatType>(g > 0.1);
+    const FloatType ldot = l_dot_max * g;
     GET_PROPERTY(Self::particle_var::length) += d_t * ldot;
     //
     // const FloatType ldot = l_dot_max * g;

tools/cases.xml

@@ -64,12 +64,12 @@
       <!-- <cma_case_path>/app/cma_data/0d_gas/</cma_case_path> -->
       <!-- <cma_case_path >/home_pers/casale/Documents/thesis/cfd/sanofi/</cma_case_path> -->
       <!-- <cma_case_path >/home-local/casale/Documents/thesis/cfd-cma/cma_data/sanofi/</cma_case_path> -->
-      <final_time>5000</final_time>
-      <number_particle>100000</number_particle>
-      <delta_time>1</delta_time>
+      <final_time>6000</final_time>
+      <number_particle>10000</number_particle>
+      <delta_time>0.1</delta_time>
       <results_file_name>debug</results_file_name>
-      <number_exported_result>10</number_exported_result>
-      <model_name>fixed_length</model_name>
+      <number_exported_result>50</number_exported_result>
+      <model_name>monod</model_name>
        <!-- <initialiser_path /> -->
       <initialiser_path>./cma_data/0d_4s_init.h5</initialiser_path>
    </control>

tools/runner.py

@@ -41,7 +41,7 @@ def get_executable(instal: str, mpi: bool = True):
     if instal:
         return f"/opt/biomc/{appname}"
     else:
-        return f"{ROOT}/builddir/gpu/apps/cli/{appname}"
+        return f"{ROOT}/builddir/host/apps/cli/{appname}"
 
 
 def mk_parser():