udf: clean minimal model

Author: Benncs

apps/libs/mc/public/mc/particles_container.hpp

@@ -1,8 +1,8 @@
 #ifndef __PARTICLES_CONTAINER_HPP__
 #define __PARTICLES_CONTAINER_HPP__
 
-#include "biocma_cst_config.hpp"
 #include <Kokkos_Core.hpp>
+#include <biocma_cst_config.hpp>
 #include <common/common.hpp>
 #include <common/env_var.hpp>
 #include <common/has_serialize.hpp>

apps/udf_model/minimal.cpp

@@ -14,13 +14,13 @@
 
 namespace
 {
-  using namespace Models;
-  using FloatType = Models::UdfModel::FloatType;
-
   void __attribute__((constructor)) on_load()
   {
+
     std::printf("[UDF]: Minimal model loaded\r\n"); // NOLINT
   }
+  using namespace Models;
+  using FloatType = Models::UdfModel::FloatType;
 
   constexpr FloatType glucose_to_biomass_yield = 0.5;
 
@@ -34,9 +34,6 @@ namespace
 
   constexpr FloatType phi_s_max =
       (l_dot_max * lin_density) / glucose_to_biomass_yield; // kg/s
-  // Distributions
-  const auto l_initial_dist = MC::Distributions::TruncatedNormal<float>(
-      l_max_m * 0.75, l_max_m / 10., l_min_m, l_max_m);
 
   enum class particle_var : uint8_t
   {

tools/cases.xml

@@ -64,8 +64,8 @@
       <!-- <cma_case_path>/app/cma_data/0d_gas/</cma_case_path> -->
       <!-- <cma_case_path >/home_pers/casale/Documents/thesis/cfd/sanofi/</cma_case_path> -->
       <!-- <cma_case_path >/home-local/casale/Documents/thesis/cfd-cma/cma_data/sanofi/</cma_case_path> -->
-      <final_time>10</final_time>
-      <number_particle>1000000</number_particle>
+      <final_time>3600</final_time>
+      <number_particle>1000</number_particle>
       <delta_time>0.1</delta_time>
       <results_file_name>debug</results_file_name>
       <number_exported_result>10</number_exported_result>

tools/runner.py

@@ -41,7 +41,7 @@ def get_executable(instal: str, mpi: bool = True):
     if instal:
         return f"/opt/biomc/{appname}"
     else:
-        return f"{ROOT}/builddir/host_test/apps/cli/{appname}"
+        return f"{ROOT}/builddir/gpu/apps/cli/{appname}"
 
 
 def mk_parser():