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lines changed Original file line number Diff line number Diff line change 11#! /usr/bin/env bash
2-
32set -e
4- set -x
53
64# virtualenv does not require --user
75PYTHON=$( which python)
@@ -35,10 +33,10 @@ for _tsv in $(find ./TestTSV -name *.tsv -type f); do
3533 $PYTHON findSim.py ${_tsv} --model models/synSynth7.g
3634done
3735
38- findsim ./Curated/FindSim-Jain2009_Fig4F.tsv --model models/synSynth7.g
39- findsim ./Curated/FindSim-Bhalla1999_fig2B.tsv --model models/synSynth7.g
36+ time findsim ./Curated/FindSim-Jain2009_Fig4F.tsv --model models/synSynth7.g
37+ time findsim ./Curated/FindSim-Bhalla1999_fig2B.tsv --model models/synSynth7.g
4038# Following takes a lot of time to run.
4139# findsim ./Curated/FindSim-Gu2004_fig3B.tsv --model models/synSynth7.g
42- findsim ./Curated/FindSim-Ji2010_fig1C_ERK_acute.tsv --model models/synSynth7.g
43- findsim ./Curated/FindSim-Bhalla1999_fig4C.tsv --model models/synSynth7.g
40+ time findsim ./Curated/FindSim-Ji2010_fig1C_ERK_acute.tsv --model models/synSynth7.g
41+ time findsim ./Curated/FindSim-Bhalla1999_fig4C.tsv --model models/synSynth7.g
4442timeout 60 findsim_parallel Curated -n 4 || echo " Timedout. We call it success!"
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