@@ -271,9 +271,9 @@ def writeConcChan(modelpath,f,sceneitems):
271271 else :
272272 error = error + "\n x and y co-ordinates are not specified for `" + cChan .name + "` zero will be assigned \n "
273273 if color == "" or color == " " :
274- color = getRandColor ()
274+ color = getRandomColor ()
275275 if textcolor == "" or textcolor == " " :
276- textcolor = getRandColor ()
276+ textcolor = getRandomColor ()
277277 f .write ("simundump kchan /kinetics/" + trimPath (cChan )+ " " + str (int (1 )) + " " + str (cChan .permeability )+ " " +
278278 str (int (0 )) + " " +
279279 str (int (0 )) + " " +
@@ -344,9 +344,9 @@ def writeEnz( modelpath,f,sceneitems):
344344 else :
345345 error = error + "\n x and y co-ordinates are not specified for `" + enz .name + "` zero will be assigned \n "
346346 if color == "" or color == " " :
347- color = getRandColor ()
347+ color = getRandomColor ()
348348 if textcolor == "" or textcolor == " " :
349- textcolor = getRandColor ()
349+ textcolor = getRandomColor ()
350350
351351 f .write ("simundump kenz /kinetics/" + trimPath (enz ) + " " + str (int (0 ))+ " " +
352352 str (concInit ) + " " +
@@ -421,9 +421,9 @@ def writeReac(modelpath,f,sceneitems):
421421 y = 0
422422 error = error + "\n x and y co-ordinates are not specified for `" + reac .name + "` zero will be assigned \n "
423423 if color == "" or color == " " :
424- color = getRandColor ()
424+ color = getRandomColor ()
425425 if textcolor == "" or textcolor == " " :
426- textcolor = getRandColor ()
426+ textcolor = getRandomColor ()
427427 f .write ("simundump kreac /kinetics/" + trimPath (reac ) + " " + str (0 ) + " " + str (kf ) + " " + str (kb ) + " \" \" " +
428428 str (color ) + " " + str (textcolor ) + " " + str (int (x )) + " " + str (int (y )) + " " + str (0 )+ "\n " )
429429 return reacList ,error
@@ -628,9 +628,9 @@ def writePool(modelpath,f,volIndex,sceneitems):
628628 geometryName = volIndex [float (poolsCmpt .volume )]
629629 volume = p .volume * NA * 1e-3
630630 if color == "" or color == " " :
631- color = getRandColor ()
631+ color = getRandomColor ()
632632 if textcolor == "" or textcolor == " " :
633- textcolor = getRandColor ()
633+ textcolor = getRandomColor ()
634634 f .write ("simundump kpool /kinetics/" + trimPath (p ) + " 0 " +
635635 str (p .diffConst ) + " " +
636636 str (0 ) + " " +
@@ -673,15 +673,15 @@ def getColorCheck(color,GENESIS_COLOR_SEQUENCE):
673673 else :
674674 raise Exception ("Invalid Color Value!" )
675675
676- def getRandColor ():
676+ def getRandomColor ():
677677 ignoreColor = ["mistyrose" ,"antiquewhite" ,"aliceblue" ,"azure" ,"bisque" ,"black" ,"blanchedalmond" ,"blue" ,"cornsilk" ,"darkolivegreen" ,"darkslategray" ,"dimgray" ,"floralwhite" ,"gainsboro" ,"ghostwhite" ,"honeydew" ,"ivory" ,"lavender" ,"lavenderblush" ,"lemonchiffon" ,"lightcyan" ,"lightgoldenrodyellow" ,"lightgray" ,"lightyellow" ,"linen" ,"mediumblue" ,"mintcream" ,"navy" ,"oldlace" ,"papayawhip" ,"saddlebrown" ,"seashell" ,"snow" ,"wheat" ,"white" ,"whitesmoke" ,"aquamarine" ,"lightsalmon" ,"moccasin" ,"limegreen" ,"snow" ,"sienna" ,"beige" ,"dimgrey" ,"lightsage" ]
678678 matplotcolor = {}
679679 for name ,hexno in matplotlib .colors .cnames .items ():
680680 matplotcolor [name ]= hexno
681681
682682 k = random .choice (list (matplotcolor .keys ()))
683683 if k in ignoreColor :
684- return getRandColor ()
684+ return getRandomColor ()
685685 else :
686686 return k
687687def writeCompartment (modelpath ,compts ,f ):
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