napari-clusters-plotter/src/napari_clusters_plotter/napari.yaml at 3e6d3aa3e7e3e15f09ae10471aa8b58db78f9e6c · BiAPoL/napari-clusters-plotter · GitHub

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name: napari-clusters-plotter
display_name: napari clusters plotter
contributions:
  commands:
  - id: napari-clusters-plotter.plotter
    python_name: napari_clusters_plotter:PlotterWidget
    title: Clusters Plotter

  - id: napari-clusters-plotter.Dimensionality_Reduction
    python_name: napari_clusters_plotter:DimensionalityReductionWidget
    title: Dimensionality Reduction

  - id: napari-clusters-plotter.Clustering
    python_name: napari_clusters_plotter:ClusteringWidget
    title: Clustering

  - id: napari-clusters-plotter.bbbc_sample_data
    python_name: napari_clusters_plotter:bbbc_1_dataset
    title: Load bbbc sample data
  - id: napari-clusters-plotter.cells3d_curvatures
    python_name: napari_clusters_plotter:cells3d_curvatures
    title: Load cells3d mitotic nucleus surface curvatures

  - id: napari-clusters-plotter.tgmm_mini_data
    python_name: napari_clusters_plotter:tgmm_mini_dataset
    title: Load tgmm mini dataset

  menus:
    napari/layers/visualize:
      - command: napari-clusters-plotter.plotter

    napari/layers/measure:
      - command: napari-clusters-plotter.Dimensionality_Reduction

    napari/layers/classify:
      - command: napari-clusters-plotter.Clustering

  widgets:
    - command: napari-clusters-plotter.plotter
      autogenerate: false
      display_name: Plot & select features
    - command: napari-clusters-plotter.Dimensionality_Reduction
      autogenerate: false
      display_name: Dimensionality reduction (features)
    - command: napari-clusters-plotter.Clustering
      autogenerate: false
      display_name: Clustering (features)

  sample_data:
  - command: napari-clusters-plotter.bbbc_sample_data
    key: bbbc1
    display_name: BBBC 1 dataset & segmentations
  - command: napari-clusters-plotter.tgmm_mini_data
    key: tgmm_mini
    display_name: TGMM mini dataset (tracks and segmentations)
  - command: napari-clusters-plotter.cells3d_curvatures
    key: cells3d_curvatures
    display_name: Cells3D mitotic nucleus surface curvatures