updated README.md

Author: dpfoose

README.md

@@ -1,18 +1,32 @@
 Metabolomics Analysis Toolbox
 ===============================
-This is designed for use with the old omics_analysis app.
-Before using any of the code run startup.m in the omics_analysis directory.
-
-Use:
+Use
 -----
 Run startup.m before running any other scripts.
 
-Deployment practices:
+Branches
+---------
+The `omics-dashboard` branch is for use with the new Omics Dashboard service
+The `master` branch is for use with the old omics_analysis service.
+
+Releases
 ---------------------
 Releases are done as snapshots of the `master` or `omics-dashboard` branch
 
 Release names should include the data in ISO Format (YYYYMMDD) and the branch from which the release is derived.
 
+Programs
+---------
+|Script|Description|
+| ---- | --------- |
+|opls/main | Orthogonal Projection on Latent Structures|
+|pca/main | Orthogonal Projection on Latent Structures|
+|fix_spectra/fix_spectra - Baseline correction, alignment to reference, and zero regions|
+|bin/main | Bin based quantification/deconvolution designed around dynamic adaptive binning|
+|visualization/visualize_collections/main |Flexible spectral viewer|
+
+Development Practices
+----------------------
 ### Common and Library directories
 |Directory|Purpose|
 | -------- | -------- |