Move to 3.6.0

danifranco · danifranco · commit 36b6e1f129a6 · 2025-07-09T10:19:26.000+02:00
diff --git a/biapy/__init__.py b/biapy/__init__.py
@@ -1,4 +1,4 @@
-__version__ = "3.5.13"
+__version__ = "3.6.0"
 
 import argparse
 import os
diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "biapy"
-version = "3.5.13"
+version = "3.6.0"
 description = "BiaPy: Bioimage analysis pipelines in Python"
 readme = "README.md"
 requires-python = ">=3.10"
diff --git a/templates/classification/2d_classification.yaml b/templates/classification/2d_classification.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/classification/2d_classification_rgb.yaml b/templates/classification/2d_classification_rgb.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/classification/3d_classification.yaml b/templates/classification/3d_classification.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/denoising/2d_denoising.yaml b/templates/denoising/2d_denoising.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 # We try to mimic here N2Void project parameters 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/denoising/3d_denoising.yaml b/templates/denoising/3d_denoising.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 # We try to mimic here N2Void project parameters 
 
 SYSTEM:
diff --git a/templates/detection/2d_detection.yaml b/templates/detection/2d_detection.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/detection/3D_cell_detection_zarr_tutorial.yaml b/templates/detection/3D_cell_detection_zarr_tutorial.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13                                                                                                  
+# BiaPy version: 3.6.0                                                                                                  
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/detection/3d_detection.yaml b/templates/detection/3d_detection.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/image-to-image/2d_image-to-image.yaml b/templates/image-to-image/2d_image-to-image.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/image-to-image/3d_image-to-image.yaml b/templates/image-to-image/3d_image-to-image.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/instance_segmentation/2d_instance_segmentation.yaml b/templates/instance_segmentation/2d_instance_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/instance_segmentation/3d_instance_segmentation.yaml b/templates/instance_segmentation/3d_instance_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/instance_segmentation/CartoCell_paper/cartocell_inference_latest.yaml b/templates/instance_segmentation/CartoCell_paper/cartocell_inference_latest.yaml
@@ -1,4 +1,4 @@
-# CartoCell inference workflow compatible with BiaPy version 3.5.13
+# CartoCell inference workflow compatible with BiaPy version 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/instance_segmentation/CartoCell_paper/cartocell_training_latest.yaml b/templates/instance_segmentation/CartoCell_paper/cartocell_training_latest.yaml
@@ -1,4 +1,4 @@
-# CartoCell training workflow compatible with BiaPy version 3.5.13
+# CartoCell training workflow compatible with BiaPy version 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/self-supervised/2d_self-supervised.yaml b/templates/self-supervised/2d_self-supervised.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/self-supervised/3d_self-supervised.yaml b/templates/self-supervised/3d_self-supervised.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/semantic_segmentation/2d_semantic_segmentation.yaml b/templates/semantic_segmentation/2d_semantic_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/semantic_segmentation/3d_semantic_segmentation.yaml b/templates/semantic_segmentation/3d_semantic_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/semantic_segmentation/wound_segmentation.yaml b/templates/semantic_segmentation/wound_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/super-resolution/2d_super-resolution.yaml b/templates/super-resolution/2d_super-resolution.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/super-resolution/2d_super-resolution_rgb.yaml b/templates/super-resolution/2d_super-resolution_rgb.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1
diff --git a/templates/super-resolution/3d_super-resolution.yaml b/templates/super-resolution/3d_super-resolution.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.13
+# BiaPy version: 3.6.0
 
 SYSTEM:
     NUM_CPUS: -1

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-__version__ = "3.5.13"`
	`1`	`+__version__ = "3.6.0"`
`2`	`2`
`3`	`3`	`import argparse`
`4`	`4`	`import os`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# BiaPy version: 3.5.13`
	`1`	`+# BiaPy version: 3.6.0`
`2`	`2`
`3`	`3`	`SYSTEM:`
`4`	`4`	`NUM_CPUS: -1`