ENH update codes for database and threshold

cocodyq · cocodyq · commit 1fff9d4174bc · 2024-04-19T12:19:02.000+08:00
diff --git a/Manuscript_analysis/data/figure1/RNAcode_cutoff.csv b/Manuscript_analysis/data/figure1/RNAcode_cutoff.csv
@@ -0,0 +1,10 @@
+Threshold,Number of smORFs
+0.05,310952318
+0.04,305374843
+0.03,298350458
+0.02,288769139
+0.01,273029693
+0.005,257809620
+0.001,230205815
+0.0001,194350323
+0.00001,164477502
diff --git a/Manuscript_analysis/data/figure1/database.csv b/Manuscript_analysis/data/figure1/database.csv
@@ -0,0 +1,6 @@
+Database,all,mapped
+NMPFamsDB,56786,53833
+FesNov,630375,602591
+SmProt2,788586,214590
+OpenProt2.0,1781907,106736
+sORFs.org,4377422,600776
diff --git a/Manuscript_analysis/data/figure1/metaP_cutoff.csv b/Manuscript_analysis/data/figure1/metaP_cutoff.csv
@@ -0,0 +1,11 @@
+Threshold,Number of smORFs
+1,129661
+0.9,786178
+0.8,2173265
+0.7,4398455
+0.6,7832933
+0.5,12949330
+0.4,20690122
+0.3,32547731
+0.2,55416378
+0.1,92774076
diff --git a/Manuscript_analysis/data/figure1/metaT_cutoff.csv b/Manuscript_analysis/data/figure1/metaT_cutoff.csv
@@ -0,0 +1,11 @@
+Threshold,Number of smORFs
+1,625497810
+2,368612203
+3,223615075
+4,146662581
+5,104244687
+6,78997533
+7,62558835
+8,51146557
+9,42746694
+10,36365994
diff --git a/Manuscript_analysis/data/figure1/riboseq_cutoff.csv b/Manuscript_analysis/data/figure1/riboseq_cutoff.csv
@@ -0,0 +1,11 @@
+Threshold,Number of smORFs
+1,23967307
+2,11432303
+3,4986570
+4,3380067
+5,2511203
+6,2120249
+7,1808330
+8,1605794
+9,1437715
+10,1302014
diff --git a/Manuscript_analysis/figure1.ipynb b/Manuscript_analysis/figure1.ipynb
