ENH update supp fig4 upset plot

Author: cocodyq

Manuscript_analysis/Supp figure4.ipynb

@@ -145,6 +145,23 @@
     "ax.spines['top'].set_visible(False)\n",
     "ax.spines['right'].set_visible(False)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "## data is too large to show here\n",
+    "#from upsetplot import UpSet\n",
+    "#from upsetplot import from_indicators\n",
+    "\n",
+    "#df = pd.read_csv('100AA_quality.tsv',sep = \"\\t\")\n",
+    "#df = df.replace(\"T\",True).replace(\"F\",False).replace(\"NA\",False)\n",
+    "#fig = plt.figure()\n",
+    "#pltDict = UpSet(from_indicators(['RNAcode','AntiFam','metaProteome','(meta)Riboseq','Terminal checking','metaTranscriptome'],df),sort_by='cardinality',min_subset_size=300000,facecolor='#1b9e77').plot(fig)\n",
+    "#fig.savefig('100AA_upset.svg')"
+   ]
   }
  ],
  "metadata": {