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ENH update supp figure
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General_Scripts/08_Conserved_domain_annotation/01_Annotation/02_add_pssm_length.py

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@@ -36,4 +36,4 @@ def filter_cov(infile,outfile):
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outfile2 = '1_cdd_tcov_90AA.tsv'
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add_length(infile1,infile2,outfile1)
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filter_cov(infile1,outfile2)
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filter_cov(outfile1,outfile2)

General_Scripts/08_Conserved_domain_annotation/Readme.md

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| **Code** | **Description** | **Input** | **Output** |
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| :---: | :---: | :---: | :---: |
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| 01_cdd.sh | Map 90AA families to CDD database. | 90AA_GMSC.faa | 90AA_cdd.tsv |
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| 02_add_pssm_length.py | Filter results with target coverage >80%. | cddid_all.tbl.gz 90AA_cdd.tsv | 1_cdd_tcov_90AA.tsv |
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| 02_add_pssm_length.py | Filter results with target coverage >80%. | cddid_all.tbl.gz 90AA_cdd.tsv | 90AA_cdd_tl.tsv.gz 1_cdd_tcov_90AA.tsv |
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### 02_multi-phylum analysis
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Manuscript_analysis/Supp figure1.ipynb

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Manuscript_analysis/Supp figure2.ipynb

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Manuscript_analysis/Supp figure3.ipynb

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Manuscript_analysis/Supp figure4.ipynb

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Manuscript_analysis/Supp figure5.ipynb

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