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1 parent 42abbf2 commit 3accd8fCopy full SHA for 3accd8f
gmsc_mapper/main.py
@@ -479,15 +479,15 @@ def main(args=None):
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summary.append(
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f'{annotated_number} ({1 - rank_percentage["no rank"]:.2%}) aligned smORFs have taxonomy annotation.')
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for rank in [
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- 'superkingdom',
+ 'kingdom',
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'phylum',
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'class',
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'order',
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'family',
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'genus',
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'species']:
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- f'{rank_number[rank]} ({rank_percentage["superkingdom"]:.2%}) aligned smORFs are annotated at level of {rank}.')
+ f'{rank_number[rank]} ({rank_percentage[rank]:.2%}) aligned smORFs are annotated at level of {rank}.')
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with atomic_write(f'{args.output}/summary.txt', overwrite=True) as ofile:
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for s in summary:
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