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lines changed Original file line number Diff line number Diff line change @@ -18,13 +18,10 @@ Clone GMSC-mapper repository
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git clone https://github.com/BigDataBiology/GMSC-mapper.git
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```
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- Create conda environment(only support python v3.8-9)
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+ Create conda environment
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``` bash
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- conda create -n gmscmapper python=3.8
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- conda activate gmscmapper
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- or
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- conda create -n gmscmapper python=3.9
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+ conda create -n gmscmapper python
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conda activate gmscmapper
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```
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@@ -36,7 +33,7 @@ You will need the following dependencies:
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The easiest way to install the dependencies is with [ conda] ( https://conda.io ) :
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``` bash
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- conda install -c conda-forge -c bioconda mmseqs2
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+ conda install -c bioconda -c conda-forge mmseqs2
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conda install -c bioconda -c conda-forge diamond=2.0.13
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```
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- atomicwrites == 1.4.0
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+ atomicwrites
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biopython
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Bottleneck
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certifi
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- mkl-service == 2.4.0
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numexpr
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numpy
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packaging
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- pandas == 1.4.3
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+ pandas
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pyparsing
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- pyrodigal == 1.1.1
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+ pyrodigal
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python-dateutil
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pytz
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six
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'Programming Language :: Python :: 3.8' ,
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'Programming Language :: Python :: 3.9' ,
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'Programming Language :: Python :: 3.10' ,
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+ 'Programming Language :: Python :: 3.11' ,
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],
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packages = ['gmsc_mapper' ],
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install_requires = open ('./requirements.txt' , 'r' ).read ().splitlines (),
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