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Merge pull request #22 from BioComputingUP/issue-templates
Update issue templates
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---
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name: Add term annotations
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about: Add information to an existing term
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title: "[ADD] <ID> <label> — add <synonym/definition/xref/...>"
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labels: ''
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assignees: ''
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---
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**Term ID and label**
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(e.g., liquid-liquid phase separation (IDPO:0000025))
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**Information to add**
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(e.g., name, synonym, definition, definition source, cross-reference, usage note, etc.)
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**Evidence / references**
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Provide PMIDs/DOIs, datasets, or community discussions supporting the addition.
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**Additional Information**
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---
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name: Amend ontology structure
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about: Request structural modifications (new parent, merge, split, deprecate/replace)
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title: "[REORG] <action>"
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labels: ''
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assignees: ''
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---
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**Affected Terms (ID + name)**
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(e.g., liquid-liquid phase separation (IDPO:0000025))
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**Requested action**
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- [ ] update hierarchy
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- Proposed new Parent Term and ID
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- Annotations to be modified (e.g. any definition tweaks needed to fit the new parent)
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- [ ] merge
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- “Target” term to keep (ID + label)
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- Which annotations to carry over (synonyms with types, xrefs, usage notes)
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- [ ] split
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- Proposed new terms (for each: provisional label, definition, parent(s), key differentiating criterion, initial synonyms)
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- Clear assignment rules (how existing annotations should map to each new term)
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- [ ] deprecate & replace
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- Obsolescence reason (out of scope, inaccurate, superseded, duplicate, etc.)
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- Replacement guidance: “replaced_by” (one best match) and/or “consider” (alternatives), with IDs.
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**Rationale / use case**
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Why is this change needed?
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**Evidence / references**
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PMIDs/DOIs or community discussions.
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**Additional Information**
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---
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name: Edit term annotations
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about: Modify the information of an existing term
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title: "[EDIT] <ID> <label> — change <definition/synonym/xref/...>"
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labels: ''
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assignees: ''
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---
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**Term ID and current label**
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(e.g., liquid-liquid phase separation (IDPO:0000025))
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**Information to modify**
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(e.g., name, synonym, definition, definition source, cross-reference, usage note, etc.)
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**Rationale / use case**
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Why is this modification needed?
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**Evidence / references**
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PMIDs/DOIs or other sources. If changing the label, indicate whether the old label should remain as an exact/related synonym.
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**Additional Information**
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---
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name: New term request
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about: Suggest a new term for this ontology
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title: "[NTR] <preferred label>"
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labels: new term request
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assignees: ''
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---
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For new term requests, please provide the following information:
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**Preferred term label**
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(e.g., liquid-liquid phase separation)
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**Synonyms**
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(e.g., liquid–liquid demixing; note synonym types if known: exact/related/broad/narrow)
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**Abbreviation (if any)**
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(e.g., LLPS)
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**Textual definition**
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The definition should be understandable to non-specialists. Include a PubMed ID (PMID/DOI) for the source of the definition or other relevant references.
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**Suggested parent term**
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Please look in the hierarchy in a browser such as [OLS](http://www.ebi.ac.uk/ols/ontologies/idpo). Provide IDs (e.g., IDPO:0000123).
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**Rationale / use case**
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Why is this term needed? Where will it be used?
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**Attribution**
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If you would like a nano attribution, please indicate your ORCID id
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**Additional Information**

issue_template.md

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