From e88518fd366b4b2602b17a9b7f3411e086d51ad7 Mon Sep 17 00:00:00 2001 From: Ximeaixa Date: Wed, 1 Oct 2025 09:20:13 +0200 Subject: [PATCH 1/3] fix duplicated labels --- src/ontology/idpo-edit.owl | 36 ------------------------------------ 1 file changed, 36 deletions(-) diff --git a/src/ontology/idpo-edit.owl b/src/ontology/idpo-edit.owl index 85e7a47..d38284e 100644 --- a/src/ontology/idpo-edit.owl +++ b/src/ontology/idpo-edit.owl @@ -121,30 +121,6 @@ Declaration(AnnotationProperty(rdfs:label)) # Annotation Properties ############################ -# Annotation Property: (example of usage) - -AnnotationAssertion(rdfs:label "example of usage") - -# Annotation Property: (definition) - -AnnotationAssertion(rdfs:label "definition") - -# Annotation Property: (has ontology root term) - -AnnotationAssertion(rdfs:label "has ontology root term") - -# Annotation Property: (abbreviation) - -AnnotationAssertion(rdfs:label "abbreviation") - -# Annotation Property: (database_cross_reference) - -AnnotationAssertion(rdfs:label "database_cross_reference") - -# Annotation Property: (has_obo_format_version) - -AnnotationAssertion(rdfs:label "has_obo_format_version") - # Annotation Property: (has_obo_namespace) AnnotationAssertion(rdfs:label "has_obo_namespace") @@ -166,18 +142,6 @@ AnnotationAssertion(rdfs:label "ha ObjectPropertyDomain( ) ObjectPropertyRange( ) -# Object Property: (has quality) - -AnnotationAssertion(rdfs:label "has quality") - -# Object Property: (has input) - -AnnotationAssertion(rdfs:label "has input"@en) - -# Object Property: (has output) - -AnnotationAssertion(rdfs:label "has output") - ############################ From e75725da5bad6b1a17d59b266c390ccd8a4cded8 Mon Sep 17 00:00:00 2001 From: Ximeaixa Date: Wed, 1 Oct 2025 09:25:50 +0200 Subject: [PATCH 2/3] fix typo in term definition --- src/ontology/idpo-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/idpo-edit.owl b/src/ontology/idpo-edit.owl index d38284e..1c0d073 100644 --- a/src/ontology/idpo-edit.owl +++ b/src/ontology/idpo-edit.owl @@ -747,7 +747,7 @@ SubClassOf( ObjectSomeValuesFrom( (protein aggregate formation) -AnnotationAssertion(Annotation( "PMID:33510441") "Process involving a non-native state of a protein in which isoluble intermolecular interactions are established to form a higher-order irreversible assembly, usually as result of aberrant liquid-liquid phase separation.") +AnnotationAssertion(Annotation( "PMID:33510441") "Process involving a non-native state of a protein in which insoluble intermolecular interactions are established to form a higher-order irreversible assembly, usually as result of aberrant liquid-liquid phase separation.") AnnotationAssertion( ) AnnotationAssertion( "PMID:38825008") AnnotationAssertion( "aggregate assembly") From 51a30673d7aad8728889637d9ad7fc9193a9b731 Mon Sep 17 00:00:00 2001 From: Ximeaixa Date: Wed, 1 Oct 2025 09:59:59 +0200 Subject: [PATCH 3/3] fix self regulation subclasses definitions --- src/ontology/idpo-edit.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/idpo-edit.owl b/src/ontology/idpo-edit.owl index 1c0d073..e399aff 100644 --- a/src/ontology/idpo-edit.owl +++ b/src/ontology/idpo-edit.owl @@ -667,7 +667,7 @@ SubClassOf( (self activation) -AnnotationAssertion( "A self-regulatory mechanism in which intramolecular interactions induce or enhance the functional activity of a protein.") +AnnotationAssertion( "A self regulatory mechanism in which intramolecular interactions induce or enhance the functional activity of a protein.") AnnotationAssertion( "autoactivation") AnnotationAssertion( "self-activation") AnnotationAssertion( "disorder_function") @@ -677,7 +677,7 @@ SubClassOf( (self inhibition) -AnnotationAssertion( "A self-regulatory mechanism in which intramolecular interactions repress or prevent the functional activity of a protein.") +AnnotationAssertion( "A self regulatory mechanism in which intramolecular interactions repress or prevent the functional activity of a protein.") AnnotationAssertion( "autoinhibition") AnnotationAssertion( "self-inhibition") AnnotationAssertion( "disorder_function")