Adding eosc-pilot/1.0-remastering container (#289)

Author: pditommaso

eosc-pilot/1.0-remastering/Dockerfile

@@ -0,0 +1,21 @@
+FROM continuumio/miniconda
+MAINTAINER Paolo Di Tommaso <[email protected]>
+
+LABEL version="1.0"
+LABEL software.version="1.0-remastering"
+LABEL software="eosc-pilot"
+LABEL about.summary="Science Demonstrator project in the context of the EOSC initiative aimed to explore the feasibility of data reproducibility and data re-mastering in genomics"
+LABEL about.home="https://github.com/CRG-CNAG/EOSC-Pilot"
+LABEL about.license="SPDX:MPL-2.0"
+LABEL base_image="continuumio/miniconda"
+
+RUN conda install -y -c r r-base 
+ 
+RUN apt-get update && apt-get -y install build-essential ttf-dejavu  
+
+RUN conda config --add channels defaults \
+ && conda config --add channels conda-forge \
+ && conda config --add channels bioconda \
+ && conda install -y picard=2.9 bwa=0.7.15 fastqc=0.11.5 sambamba=0.6.6 
+
+RUN conda install -y tabix