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MSAMANDA: the bin created using echo was missing an argument
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msamanda/1.0.0.5242/Dockerfile

Lines changed: 2 additions & 2 deletions
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@@ -5,7 +5,7 @@ FROM biocontainers/biocontainers:v1.0.0_cv4
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################## METADATA ######################
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LABEL base_image="biocontainers:v1.0.0_cv4"
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LABEL version="3"
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LABEL version="4"
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LABEL software="MSAmanda"
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LABEL software.version="1.0.0.5242"
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LABEL about.summary="scoring system to identify peptides out of tandem mass spectrometry"
@@ -32,7 +32,7 @@ RUN ZIP=MSAmanda_Standalone_LinuxMac_1.0.0.5243.zip && \
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unzip /tmp/$ZIP -d /home/biodocker/bin && \
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rm /tmp/$ZIP && \
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chmod 755 /home/biodocker/bin/MSAmanda_Standalone_LinuxMac_1.0.0.5243/MSAmanda.exe && \
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bash -c 'echo -e "#!/bin/bash\nmono /home/biodocker/bin/MSAmanda_Standalone_LinuxMac_1.0.0.5243/MSAmanda.exe $@" > /home/biodocker/bin/MSAmanda' && \
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bash -c 'echo -e "#!/bin/bash\nmono /home/biodocker/bin/MSAmanda_Standalone_LinuxMac_1.0.0.5243/MSAmanda.exe \$@" > /home/biodocker/bin/MSAmanda' && \
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chmod +x /home/biodocker/bin/MSAmanda
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ENV PATH /home/biodocker/bin/MSAmanda:$PATH

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