BatchCoverage

TPP BatchCoverage

Abyss

Abyss

velvet

https://github.com/dzerbino/velvet/tree/master
https://www.ebi.ac.uk/~zerbino/velvet/

spades

http://bioinf.spbau.ru/spades

soapec

http://soap.genomics.org.cn/soapdenovo.html

soapdenovo

http://soap.genomics.org.cn/soapdenovo.html

snpEff

snpEff 4.1k core 2015-09-07

samtools

samtools
https://github.com/samtools/samtools/

jbrowse

jbrowse
http://jbrowse.org/jbrowse-1-11-6/

htslib

htslib
https://github.com/samtools/htslib