Force installing ggplot2 version 3.5.2 to avoid CI errors

Author: elgabbas

.github/workflows/pkgdown.yaml

@@ -33,31 +33,46 @@ jobs:
       - name: Checkout repository
         uses: actions/checkout@v4
 
+      - name: Install system dependencies for GEOS, GDAL, PROJ
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y \
+          libgeos-dev \
+          libgdal-dev \
+          libproj-dev
+
       - name: Set up Pandoc
         uses: r-lib/actions/setup-pandoc@v2
-
+      
       - name: Set up R
         uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
-      - name: Ensure remotes is installed
-        run: Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")'
+      - name: Install necessary packages
+        run: |
+          Rscript -e 'install.packages(c("rcmdcheck", "remotes", "Rcpp", "lubridate", "RcppArmadillo", "tidyverse", "terra", "sf", "coda", "foreach", "fs", "tibble", "dplyr", "future", "future.apply", "rlang", "DT", "kableExtra", "knitr", "httr", "foreign", "tidyselect", "purrr", "rvest", "stringr", "rmarkdown",  "archive", "magrittr", "arrow", "caret", "colorRamps", "devtools", "doParallel", "ecospat", "fastmatch", "float", "furrr", "gdata", "ggbreak", "ggnewscale", "ggtext", "gridtext", "gt", "gtools", "janitor", "jsonify", "lobstr", "ncdf4", "pak", "pbapply", "png", "quarto", "R.utils", "RCurl", "Rfast", "rgbif", "RNetCDF", "scales", "rworldmap", "smoothr", "snow", "spelling", "testthat", "writexl", "pkgdown", "lintr", "sessioninfo", "cowplot", "ggpubr", "ggExtra", "zip", "tidyterra", "exactextractr", "blockCV", "renv"), Ncpus = parallel::detectCores())'
       
-      - name: Force install ggplot2 3.5.2
-        run: Rscript -e 'remotes::install_version("ggplot2", version = "3.5.2")'
+      - name: Install packages from github
+        run: |
+          Rscript -e 'remotes::install_github(c("elgabbas/ecokit", "hmsc-r/HMSC", "EmilHvitfeldt/paletteer", "YuLab-SMU/ggtree", "babaknaimi/sdm"))'
 
-      - name: Force install scales 1.3.0
-        run: Rscript -e 'remotes::install_version("scales", version = "1.3.0")'
+      # - name: Install some pinned package versions
+      #   run: |
+      #     Rscript -e 'renv::install(c("scales@1.3.0", "pkgdown@2.0.7", "lintr@3.0.0", "sessioninfo@1.2.2", "ggplot2@3.5.2", "cowplot@1.1.3", "ggpubr@0.6.0", "ggExtra@0.10.1"))'
 
-      - name: Force install pkgdown 2.0.7
-        run: Rscript -e 'remotes::install_version("pkgdown", version = "2.0.7")'
-
-      - name: Install dependencies
-        uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::pkgdown, local::.
-          needs: website
+      - name: Install remaining dependencies
+        run: |
+          Rscript -e 'remotes::install_deps(dependencies=c("Depends", "Imports"), upgrade = "never")'
+          Rscript -e 'renv::install("ggplot2@3.5.2")'
+      
+      # Run R CMD check (without relying on r-lib/actions)
+      # - name: Run R CMD check
+      #   env:
+      #     _R_CHECK_FORCE_SUGGESTS_: false
+      #   run: |
+      #     Rscript -e 'packageVersion("ggplot2")'
+      #     Rscript -e 'rcmdcheck::rcmdcheck(args="--no-manual", error_on="error")'
 
       - name: Build site
         run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)