abaird - patient generator generates too many broken patients, commenting out distributions until we can get it to be a bit more reliable, all other data fields seem to work well after testing. Fixing a nan that pops up for the agglutinate model

Author: ajbaird

projects/biogears/libBiogears/src/cdm/substance/SESubstanceClearance.cpp

@@ -223,7 +223,6 @@ bool SESubstanceClearance::HasCellBirthRate() const
 //-----------------------------------------------------------------------------
 SEScalarFrequency& SESubstanceClearance::GetCellBirthRate()
 {
-
   return m_def.CellBirthRate;
 }
 //-----------------------------------------------------------------------------

projects/biogears/libBiogears/src/engine/Controller/BioGears.cpp

@@ -617,7 +617,7 @@ bool BioGears::SetupPatient()
   double respirationRate_bpm;
   double respirationRateStandard_bpm = 14.0;
   double respirationRateMax_bpm = 20.0;
-  double respirationRateMin_bpm = 12.0;
+  double respirationRateMin_bpm = 10.0;
   if (!m_Patient->HasRespirationRateBaseline()) {
     respirationRate_bpm = respirationRateStandard_bpm;
     m_Patient->GetRespirationRateBaseline().SetValue(respirationRate_bpm, FrequencyUnit::Per_min);

projects/cli/src/data/PatientGenerator.cpp

@@ -148,24 +148,24 @@ bool PatientGenerator::process(const std::string& name, const std::string& value
     } catch (std::exception e) {
       rValue = false;
     }
-  } else if ("RightLungFraction" == name) {
-    PatientData::RightLungRatio_type rlr_data;
-    try {
-      rlr_data.value(std::stod(value));
-      patient.RightLungRatio(rlr_data);
-    } catch (std::exception e) {
-      rValue = false;
-    }
-  } else if ("SkinSurfaceArea" == name) {
-    size_t pos;
-    PatientData::SkinSurfaceArea_type ssa_data;
-    try {
-      ssa_data.value(std::stod(value, &pos));
-      ssa_data.unit(biogears::trim(value.substr(pos)));
-      patient.SkinSurfaceArea(ssa_data);
-    } catch (std::exception e) {
-      rValue = false;
-    }
+  //} else if ("RightLungFraction" == name) {
+  //  PatientData::RightLungRatio_type rlr_data;
+  //  try {
+  //    rlr_data.value(std::stod(value));
+  //    patient.RightLungRatio(rlr_data);
+  //  } catch (std::exception e) {
+  //    rValue = false;
+  //  }
+  //} else if ("SkinSurfaceArea" == name) {
+  //  size_t pos;
+  //  PatientData::SkinSurfaceArea_type ssa_data;
+  //  try {
+  //    ssa_data.value(std::stod(value, &pos));
+  //    ssa_data.unit(biogears::trim(value.substr(pos)));
+  //    patient.SkinSurfaceArea(ssa_data);
+  //  } catch (std::exception e) {
+  //    rValue = false;
+  //  }
   } else if ("BasalMetabolicRate" == name) {
     size_t pos;
     PatientData::BasalMetabolicRate_type bmr_data;