Update script and files to include associatedDisease equivalence

Author: ljgarcia

notebooks/BioschemasTypes.ipynb

@@ -208,7 +208,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 1,
    "id": "90246e73-5b99-42b6-9c54-28a2fc147ea0",
    "metadata": {},
    "outputs": [],
@@ -220,7 +220,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
+   "execution_count": 2,
    "id": "8f5d0652-2029-4cfd-b9cc-9faa9964214f",
    "metadata": {},
    "outputs": [],
@@ -229,7 +229,7 @@
     "\n",
     "    #Classes and properties already aincluded in schema.org\n",
     "    types_in_schema = [\"BioChemEntity\", \"ChemicalSubstance\", \"Gene\", \"MolecularEntity\", \"Protein\", \"Taxon\"]\n",
-    "    properties_in_schema = [\"bioChemInteraction\", \"bioChemSimilarity\", \"biologicalRole\", \"hasBioChemEntityPart\", \"hasMolecularFunction\", \"hasRepresentation\", \"isEncodedByBioChemEntity\", \"isInvolvedInBiologicalProcess\", \"isLocatedInSubcellularLocation\", \"isPartOfBioChemEntity\", \"taxonomicRange\", \"alternativeOf\", \"encodesBioChemEntity\", \"expressedIn\", \"hasBioPolymerSequence\", \"chemicalComposition\", \"chemicalRole\", \"potentialUse\", \"chemicalRole\", \"inChi\", \"inChiKey\", \"iupacName\", \"molecularFormula\", \"molecularWeight\", \"monoisotopicMolecularWeight\", \"smiles\", \"childTaxon\", \"parentTaxon\", \"taxonRank\"]\n",
+    "    properties_in_schema = [\"associatedDisease\", \"bioChemInteraction\", \"bioChemSimilarity\", \"biologicalRole\", \"hasBioChemEntityPart\", \"hasMolecularFunction\", \"hasRepresentation\", \"isEncodedByBioChemEntity\", \"isInvolvedInBiologicalProcess\", \"isLocatedInSubcellularLocation\", \"isPartOfBioChemEntity\", \"taxonomicRange\", \"alternativeOf\", \"encodesBioChemEntity\", \"expressedIn\", \"hasBioPolymerSequence\", \"chemicalComposition\", \"chemicalRole\", \"potentialUse\", \"chemicalRole\", \"inChi\", \"inChiKey\", \"iupacName\", \"molecularFormula\", \"molecularWeight\", \"monoisotopicMolecularWeight\", \"smiles\", \"childTaxon\", \"parentTaxon\", \"taxonRank\"]\n",
     "    eq_schema = URIRef(\"https://schema.org/\")\n",
     "    \n",
     "    #iterates over all classes in the bioschemas namespace\n",
@@ -265,7 +265,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
+   "execution_count": 3,
    "id": "c47ba42a-79a9-416c-bd63-32d72df73210",
    "metadata": {},
    "outputs": [],
@@ -298,7 +298,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 21,
+   "execution_count": 4,
    "id": "7515e020-7489-4238-b879-156fe1d61003",
    "metadata": {},
    "outputs": [],