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@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 5dc937ab2356c2a8b0f0b0268f24fa47
+config: 3953081805a73afa15455a39fb246296
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_modules/biocutils/assign.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1">
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html"><link rel="search" title="Search" href="../../search.html">
 
-    <!-- Generated with Sphinx 8.2.3 and Furo 2025.09.25 -->
-        <title>biocutils.assign - biocutils 0.3.2.dev1 documentation</title>
+    <!-- Generated with Sphinx 8.2.3 and Furo 2025.12.19 -->
+        <title>biocutils.assign - biocutils 0.3.1.dev0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=03e43079" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=580074bf" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=7bdb33bb" />
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@@ -161,7 +161,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">biocutils 0.3.2.dev1 documentation</div></a>
+      <a href="../../index.html"><div class="brand">biocutils 0.3.1.dev0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -182,7 +182,7 @@
 
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
-  <span class="sidebar-brand-text">biocutils 0.3.2.dev1 documentation</span>
+  <span class="sidebar-brand-text">biocutils 0.3.1.dev0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -251,7 +251,8 @@ <h1>Source code for biocutils.assign</h1><div class="highlight"><pre>
 <span class="sd">    :py:func:`~biocutils.assign_sequence.assign_sequence` instead.</span>
 
 <span class="sd">    Args:</span>
-<span class="sd">        x: Object to be assignted.</span>
+<span class="sd">        x:</span>
+<span class="sd">            Object to be assignted.</span>
 
 <span class="sd">    Returns:</span>
 <span class="sd">        The object after assignment, typically the same type as ``x``.</span>
@@ -293,7 +294,7 @@ <h1>Source code for biocutils.assign</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=2e4a5242"></script>
+</div><script src="../../_static/documentation_options.js?v=f0846db4"></script>
     <script src="../../_static/doctools.js?v=9bcbadda"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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_modules/biocutils/assign_rows.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1">
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html"><link rel="search" title="Search" href="../../search.html">
 
-    <!-- Generated with Sphinx 8.2.3 and Furo 2025.09.25 -->
-        <title>biocutils.assign_rows - biocutils 0.3.2.dev1 documentation</title>
+    <!-- Generated with Sphinx 8.2.3 and Furo 2025.12.19 -->
+        <title>biocutils.assign_rows - biocutils 0.3.1.dev0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=03e43079" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=580074bf" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=7bdb33bb" />
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@@ -161,7 +161,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">biocutils 0.3.2.dev1 documentation</div></a>
+      <a href="../../index.html"><div class="brand">biocutils 0.3.1.dev0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -182,7 +182,7 @@
 
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
-  <span class="sidebar-brand-text">biocutils 0.3.2.dev1 documentation</span>
+  <span class="sidebar-brand-text">biocutils 0.3.1.dev0 documentation</span>
 
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   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -268,18 +268,18 @@ <h1>Source code for biocutils.assign_rows</h1><div class="highlight"><pre>
     <span class="n">tmp</span> <span class="o">=</span> <span class="p">[</span><span class="nb">slice</span><span class="p">(</span><span class="kc">None</span><span class="p">)]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
     <span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">indices</span>
     <span class="n">output</span><span class="p">[(</span><span class="o">*</span><span class="n">tmp</span><span class="p">,)]</span> <span class="o">=</span> <span class="n">replacement</span>
+
     <span class="k">return</span> <span class="n">output</span></div>
 
 
 
 <span class="nd">@assign_rows</span><span class="o">.</span><span class="n">register</span>
-<span class="k">def</span><span class="w"> </span><span class="nf">_assign_rows_numpy</span><span class="p">(</span>
-    <span class="n">x</span><span class="p">:</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">indices</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">replacement</span><span class="p">:</span> <span class="n">Any</span>
-<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">_assign_rows_numpy</span><span class="p">(</span><span class="n">x</span><span class="p">:</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">indices</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">replacement</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
     <span class="n">tmp</span> <span class="o">=</span> <span class="p">[</span><span class="nb">slice</span><span class="p">(</span><span class="kc">None</span><span class="p">)]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
     <span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">indices</span>
     <span class="n">output</span> <span class="o">=</span> <span class="n">numpy</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
     <span class="n">output</span><span class="p">[(</span><span class="o">*</span><span class="n">tmp</span><span class="p">,)]</span> <span class="o">=</span> <span class="n">replacement</span>
+
     <span class="k">return</span> <span class="n">output</span>
 </pre></div>
         </article>
@@ -313,7 +313,7 @@ <h1>Source code for biocutils.assign_rows</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=2e4a5242"></script>
+</div><script src="../../_static/documentation_options.js?v=f0846db4"></script>
     <script src="../../_static/doctools.js?v=9bcbadda"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=46bd48cc"></script>

_modules/biocutils/assign_sequence.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1">
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html"><link rel="search" title="Search" href="../../search.html">
 
-    <!-- Generated with Sphinx 8.2.3 and Furo 2025.09.25 -->
-        <title>biocutils.assign_sequence - biocutils 0.3.2.dev1 documentation</title>
+    <!-- Generated with Sphinx 8.2.3 and Furo 2025.12.19 -->
+        <title>biocutils.assign_sequence - biocutils 0.3.1.dev0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=03e43079" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=580074bf" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=7bdb33bb" />
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@@ -161,7 +161,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">biocutils 0.3.2.dev1 documentation</div></a>
+      <a href="../../index.html"><div class="brand">biocutils 0.3.1.dev0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -182,7 +182,7 @@
 
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
-  <span class="sidebar-brand-text">biocutils 0.3.2.dev1 documentation</span>
+  <span class="sidebar-brand-text">biocutils 0.3.1.dev0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -279,18 +279,14 @@ <h1>Source code for biocutils.assign_sequence</h1><div class="highlight"><pre>
 
 
 <span class="nd">@assign_sequence</span><span class="o">.</span><span class="n">register</span>
-<span class="k">def</span><span class="w"> </span><span class="nf">_assign_sequence_numpy</span><span class="p">(</span>
-    <span class="n">x</span><span class="p">:</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">indices</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">replacement</span><span class="p">:</span> <span class="n">Any</span>
-<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">_assign_sequence_numpy</span><span class="p">(</span><span class="n">x</span><span class="p">:</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="n">indices</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">replacement</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">numpy</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
     <span class="n">output</span> <span class="o">=</span> <span class="n">numpy</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
     <span class="n">output</span><span class="p">[</span><span class="n">indices</span><span class="p">]</span> <span class="o">=</span> <span class="n">replacement</span>
     <span class="k">return</span> <span class="n">output</span>
 
 
 <span class="nd">@assign_sequence</span><span class="o">.</span><span class="n">register</span>
-<span class="k">def</span><span class="w"> </span><span class="nf">_assign_sequence_range</span><span class="p">(</span>
-    <span class="n">x</span><span class="p">:</span> <span class="nb">range</span><span class="p">,</span> <span class="n">indices</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">replacement</span><span class="p">:</span> <span class="n">Any</span>
-<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="nb">range</span><span class="p">,</span> <span class="nb">list</span><span class="p">]:</span>
+<span class="k">def</span><span class="w"> </span><span class="nf">_assign_sequence_range</span><span class="p">(</span><span class="n">x</span><span class="p">:</span> <span class="nb">range</span><span class="p">,</span> <span class="n">indices</span><span class="p">:</span> <span class="n">Sequence</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">replacement</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="nb">range</span><span class="p">,</span> <span class="nb">list</span><span class="p">]:</span>
     <span class="k">if</span> <span class="p">(</span>
         <span class="nb">isinstance</span><span class="p">(</span><span class="n">replacement</span><span class="p">,</span> <span class="nb">range</span><span class="p">)</span>
         <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">indices</span><span class="p">,</span> <span class="nb">range</span><span class="p">)</span>
@@ -334,7 +330,7 @@ <h1>Source code for biocutils.assign_sequence</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=2e4a5242"></script>
+</div><script src="../../_static/documentation_options.js?v=f0846db4"></script>
     <script src="../../_static/doctools.js?v=9bcbadda"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=46bd48cc"></script>