Update release template

Author: lshep

.github/ISSUE_TEMPLATE/release.md

@@ -55,6 +55,9 @@ in _this_ order
 
 - [ ] Announce feature api freeze and remind about release freeze
 
+- [ ] **Flush to-be-release repo**
+
+
 ## 2 weeks before
 
 - [ ] Announce last build of Bioc release and repo is frozen.
@@ -88,8 +91,6 @@ variable!
 - [ ] Install latest biocViews on biocpush account on to-be-release master
 builder. 
 
-- [ ] Flush to-be-release repo
-
 - [ ] Start setting up new devel builders and repositories. coordinate that
   manifest has been updated to have deprecated packages removed before devel
   builders start propagting any products.
@@ -310,10 +311,6 @@ Website updates:
       biocpush@nebbiolo1:~$ ls PACKAGES/3.15/bioc/src/contrib/Archive/
   ```
 
-- [ ] A few days after release, flush the new release package repo. This will
-  remove odd numbered y of x.y.z version left over from being devel and
-  highlight packages that are erroring in release.
-
 - [ ] Branch Annotations and put backup into S3 bucket
 
 - [ ] Build dockers for new release and devel for Bioc and AnVIL

inst/scripts/sedCommandsForVariousTasks.txt

@@ -39,9 +39,9 @@ sed -i '/hook.pre-receive/s/^#//' packages.conf
 ##  Run these commands and push up new file
 ##  Once complete delete and reinstate original
 
-sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' manifest/software.txt > hooks.conf
-sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' manifest/data-experiment.txt >> hooks.conf
-sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' manifest/workflows.txt >> hooks.conf
-sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' manifest/books.txt >> hooks.conf
-sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' manifest/data-annotation.txt >> hooks.conf
+sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' ../manifest/software.txt > hooks.conf
+sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' ../manifest/data-experiment.txt >> hooks.conf
+sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' ../manifest/workflows.txt >> hooks.conf
+sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' ../manifest/books.txt >> hooks.conf
+sed '/^Package:/ s/$/\npre-receive-hook-version-numbers\:\ False\npre-receive-hook-duplicate-commits\:\ False\npre-receive-hook-large-files\:\ False\npre-receive-hook-merge-markers\:\ False/' ../manifest/data-annotation.txt >> hooks.conf
 sed -i '/^[[:blank:]]*#/d;s/#.*//' hooks.conf