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.github/workflows/build_containers.yaml

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@@ -15,13 +15,13 @@ jobs:
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fail-fast: false
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matrix:
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base:
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- {image: 'rocker/r-ver', amdtag: '4.5.1', outname: 'r-ver'}
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- {image: 'rocker/rstudio', amdtag: '4.5.1', outname: 'bioconductor_docker'}
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- {image: 'rocker/tidyverse', amdtag: '4.5.1', outname: 'tidyverse'}
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- {image: 'rocker/r-ver', amdtag: '4.5.2', outname: 'r-ver'}
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- {image: 'rocker/rstudio', amdtag: '4.5.2', outname: 'bioconductor_docker'}
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- {image: 'rocker/tidyverse', amdtag: '4.5.2', outname: 'tidyverse'}
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#- {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda'}
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#- {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml'}
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#- {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse'}
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- {image: 'rocker/shiny', amdtag: '4.5.1', outname: 'shiny'}
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- {image: 'rocker/shiny', amdtag: '4.5.2', outname: 'shiny'}
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steps:
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- uses: actions/checkout@v4
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fail-fast: false
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matrix:
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base:
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- {image: 'rocker/r-ver', armtag: '4.5.1', outname: 'r-ver'}
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- {image: 'rocker/rstudio', armtag: '4.5.1', outname: 'bioconductor_docker'}
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- {image: 'rocker/r-ver', armtag: '4.5.2', outname: 'r-ver'}
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- {image: 'rocker/rstudio', armtag: '4.5.2', outname: 'bioconductor_docker'}
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steps:
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- uses: actions/checkout@v3
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fail-fast: false
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matrix:
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base:
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- {image: 'rocker/r-ver', amdtag: '4.5.1', outname: 'r-ver', platforms: 'amd64,arm64'}
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- {image: 'rocker/rstudio', amdtag: '4.5.1', outname: 'bioconductor_docker', platforms: 'amd64,arm64'}
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- {image: 'rocker/tidyverse', amdtag: '4.5.1', outname: 'tidyverse', platforms: 'amd64'}
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- {image: 'rocker/r-ver', amdtag: '4.5.2', outname: 'r-ver', platforms: 'amd64,arm64'}
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- {image: 'rocker/rstudio', amdtag: '4.5.2', outname: 'bioconductor_docker', platforms: 'amd64,arm64'}
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- {image: 'rocker/tidyverse', amdtag: '4.5.2', outname: 'tidyverse', platforms: 'amd64'}
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#- {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda', platforms: 'amd64'}
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#- {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml', platforms: 'amd64'}
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#- {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse', platforms: 'amd64'}
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- {image: 'rocker/shiny', amdtag: '4.5.1', outname: 'shiny', platforms: 'amd64'}
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- {image: 'rocker/shiny', amdtag: '4.5.2', outname: 'shiny', platforms: 'amd64'}
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steps:
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- name: Set up Docker Buildx
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uses: docker/setup-buildx-action@v3

Dockerfile

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@@ -21,7 +21,7 @@ ARG BIOCONDUCTOR_VERSION=3.21
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##### IMPORTANT ########
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## The PATCH version number should be incremented each time
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## there is a change in the Dockerfile.
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ARG BIOCONDUCTOR_PATCH=42
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ARG BIOCONDUCTOR_PATCH=43
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ARG BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_VERSION}.${BIOCONDUCTOR_PATCH}
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# Reset args in last layer
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ARG BIOCONDUCTOR_VERSION=3.21
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ARG BIOCONDUCTOR_PATCH=42
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ARG BIOCONDUCTOR_PATCH=43
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ARG BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_VERSION}.${BIOCONDUCTOR_PATCH}
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# Set automatically when building with --platform

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