Move devel to 3.22

Author: almahmoud

.github/workflows/build_containers.yaml

@@ -15,13 +15,13 @@ jobs:
       fail-fast: false
       matrix:
         base:
-          - {image: 'ghcr.io/bioconductor/rocker-r-ver', amdtag: 'devel-amd64', outname: 'r-ver'}
-          - {image: 'ghcr.io/bioconductor/rocker-rstudio', amdtag: 'devel-amd64', outname: 'bioconductor_docker'}
-          - {image: 'rocker/tidyverse', amdtag: 'devel', outname: 'tidyverse'}
-          - {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda'}
-          - {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml'}
-          - {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse'}
-          - {image: 'rocker/shiny', amdtag: 'latest', outname: 'shiny'}
+          - {image: 'rocker/r-ver', amdtag: '4.5.0', outname: 'r-ver'}
+          - {image: 'rocker/rstudio', amdtag: '4.5.0', outname: 'bioconductor_docker'}
+          - {image: 'rocker/tidyverse', amdtag: '4.5.0', outname: 'tidyverse'}
+         # - {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda'}
+         # - {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml'}
+         # - {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse'}
+          - {image: 'rocker/shiny', amdtag: '4.5.0', outname: 'shiny'}
     steps:
       - uses: actions/checkout@v4
 
@@ -94,8 +94,8 @@ jobs:
       fail-fast: false
       matrix:
         base:
-          - {image: 'ghcr.io/bioconductor/rocker-r-ver', armtag: 'devel-arm64', outname: 'r-ver'}
-          - {image: 'ghcr.io/bioconductor/rocker-rstudio', armtag: 'devel-arm64', outname: 'bioconductor_docker'}
+          - {image: 'rocker/r-ver', armtag: '4.5.0', outname: 'r-ver'}
+          - {image: 'rocker/rstudio', armtag: '4.5.0', outname: 'bioconductor_docker'}
     steps:
       - uses: actions/checkout@v3
 
@@ -170,13 +170,13 @@ jobs:
       fail-fast: false
       matrix:
         base:
-          - {image: 'ghcr.io/bioconductor/rocker-r-ver', amdtag: 'devel-amd64', outname: 'r-ver', platforms: 'amd64,arm64'}
-          - {image: 'ghcr.io/bioconductor/rocker-rstudio', amdtag: 'devel-amd64', outname: 'bioconductor_docker', platforms: 'amd64,arm64'}
-          - {image: 'rocker/tidyverse', amdtag: 'devel', outname: 'tidyverse', platforms: 'amd64'}
-          - {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda', platforms: 'amd64'}
-          - {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml', platforms: 'amd64'}
-          - {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse', platforms: 'amd64'}
-          - {image: 'rocker/shiny', amdtag: 'latest', outname: 'shiny', platforms: 'amd64'}
+          - {image: 'rocker/r-ver', amdtag: '4.5.0', outname: 'r-ver', platforms: 'amd64,arm64'}
+          - {image: 'rocker/rstudio', amdtag: '4.5.0', outname: 'bioconductor_docker', platforms: 'amd64,arm64'}
+          - {image: 'rocker/tidyverse', amdtag: '4.5.0', outname: 'tidyverse', platforms: 'amd64'}
+          #- {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda', platforms: 'amd64'}
+          #- {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml', platforms: 'amd64'}
+          #- {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse', platforms: 'amd64'}
+          - {image: 'rocker/shiny', amdtag: '4.5.0', outname: 'shiny', platforms: 'amd64'}
     steps:
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v3

Dockerfile

@@ -16,12 +16,12 @@ ENV TARGETARCH=${TARGETARCH:-amd64}
 FROM base-$TARGETARCH AS base
 
 ## Set Dockerfile version number
-ARG BIOCONDUCTOR_VERSION=3.21
+ARG BIOCONDUCTOR_VERSION=3.22
 
 ##### IMPORTANT ########
 ## The PATCH version number should be incremented each time
 ## there is a change in the Dockerfile.
-ARG BIOCONDUCTOR_PATCH=21
+ARG BIOCONDUCTOR_PATCH=0
 
 ARG BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_VERSION}.${BIOCONDUCTOR_PATCH}
 
@@ -61,8 +61,8 @@ LABEL name="bioconductor/bioconductor_docker" \
       license="Artistic-2.0"
 
 # Reset args in last layer
-ARG BIOCONDUCTOR_VERSION=3.21
-ARG BIOCONDUCTOR_PATCH=21
+ARG BIOCONDUCTOR_VERSION=3.22
+ARG BIOCONDUCTOR_PATCH=0
 ARG BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_VERSION}.${BIOCONDUCTOR_PATCH}
 
 # Set automatically when building with --platform