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2626A vignette demonstrates how to accomplish non-trivial tasks embodying the core
2727functionality of your package. There are two common types of vignettes.
2828
29- * (Recommended) An * R markdown* vignette is similar to a * Sweave* vignette, but uses
30- [ markdown] ( http://daringfireball.net/projects/markdown/ ) instead of $\LaTeX$
31- for structuring text sections and resulting in HTML output. The `r
32- BiocStyle::CRANpkg("knitr")` package can process most * Sweave* and all * R
29+ * (Recommended) An * R markdown* vignette is similar to a * Sweave* vignette, but
30+ uses [ markdown] ( http://daringfireball.net/projects/markdown/ ) instead of
31+ $\LaTeX$ for structuring text sections and resulting in HTML output. The
32+ ` r BiocStyle::CRANpkg("knitr")` package can process most * Sweave* and all * R
3333 markdown* vignettes, producing pleasing output. Refer to [ Writing package
34- vignettes] [ CRAN vigs ] for technical details. See the `r
35- BiocStyle::Biocpkg("BiocStyle")` package for a convenient way to use common
34+ vignettes] [ CRAN vigs ] for technical details. See the
35+ ` r BiocStyle::Biocpkg("BiocStyle")` package for a convenient way to use common
3636 macros and a standard _ Bioconductor_ style vignette.
3737
3838* A * Sweave* vignette is an ` .Rnw ` file that contains $\LaTeX$ and chunks of <i
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