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wrap emails in angled brackets <>
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git-version-control.Rmd

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@@ -79,19 +79,20 @@ Builds occur once per day, and take approximately 24 hours. See the
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Traditional Annotation packages are not stored in GIT due to the size of
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annotation files. To update an existing Annotation package please send an email
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to [email protected]. A member of the Bioconductor team will be in
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to <[email protected]>. A member of the Bioconductor team will be in
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contact to receive the updated package.
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Newer annotation packages can be stored in GIT as it is a requirement to use the
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`r BiocStyle::Biocpkg("AnnotationHub")` server hosted data. The larger sized
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files are not included directly in the package. To contribute a new Annotation
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package please contact [email protected] for guidance and read the
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package please contact <[email protected]> for guidance and read the
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documentation on [Create A Hub Package][].
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Currently direct updates to annotation packages, even those stored on git, are
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not supported. If you wish to updated an annotation package, make required
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changes and push to git.bioconductor.org. Then send an email to
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[email protected] or [email protected] requesting the package be propagated.
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<[email protected]> or <[email protected]> requesting the package
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be propagated.
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## Subversion to Git Transition
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__Goal:__ You want to start fresh after failing to resolve conflicts
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or some other issue. If you intend to go nuclear, please contact the
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[email protected] mailing list.
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<[email protected]> mailing list.
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#### Force _Bioconductor_ `devel` to GitHub `devel`
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#### More questions?
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If you have additional questions which are not answered here already,
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please send an email to [email protected].
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please send an email to <[email protected]>.
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### Helpful resources:
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install-file.Rmd

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Specifying this requirement does not guarantee that _Bioconductor_ will agree to
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install the external system requirement. It is encouraged to discuss any
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additional system requirements on the [email protected] before
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additional system requirements on the <[email protected]> before
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development.
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System requirements should never be exclusive to a particular

package-end-of-life.Rmd

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A deprecated package can be un-deprecated and removed from the End of Life
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process if it is fixed before the next Bioconductor release. To have a
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package un-deprecated, please contact [email protected]. If a package
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is already in the defunct stage; the package will mostly likely be requested to
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go through the new package submission process again.
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package un-deprecated, please contact <[email protected]>. If a
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package is already in the defunct stage; the package will mostly likely be
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requested to go through the new package submission process again.
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## 'Orphaned' packages
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package is considered 'orphaned'. Occasionally, members of the Bioconductor
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community reach out to take over maintenance of an 'orphaned' package. The
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interested replacement maintainer is asked to email the original maintainer and
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[email protected], to formally request permission to take over. Unless
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there is an explicit request for a package to be retired, Bioconductor will
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grant access to the interested replacement maintainer in accordance with open
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source software licenses that Bioconductor packages require and
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<[email protected]>, to formally request permission to take over.
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Unless there is an explicit request for a package to be retired, Bioconductor
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will grant access to the interested replacement maintainer in accordance with
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open source software licenses that Bioconductor packages require and
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[package naming policy](#naming) that maintainers agree to upon submission.

package-name.Rmd

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[_Bioconductor_][biocViews] nor [CRAN][CRAN pkgs]. Reusing
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archived or deprecated package names is also strongly discouraged and often will
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not be allowed. Before submission please inquire about using a legacy package
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name on the [email protected] mailing list.
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name on the <[email protected]> mailing list.
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An easy way to check whether your name is already in use is to check that the
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following command fails using the ['devel' version][] of Bioconductor:

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