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Invalid State Exception. The LTR must be within the TSD #11

@huangziyan11111

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@huangziyan11111

Hi, I meet a problem. When I run this command, it can run successfully (LtrDetector -fasta 00.input -destDir genome.fa.001 -nThreads 4). While I add the parameter -nested (LtrDetector -fasta 00.input -destDir genome.fa.001.nested -nThreads 4 -nested), it produced the following error:

Output from: genome.fa.001 found in: genome.fa.001.nested/genome.fa.001Detector.bed
Finding nested LTR-RT in >1A=1=500000
Invalid State Exception.
The LTR must be within the TSD. The start and the end of the TSD are: 34421:46984. The start and the end of the LTR are: 34426:46984.
terminate called after throwing an instance of 'exception::InvalidStateException'
what(): The LTR must be within the TSD. The start and the end of the TSD are: 34421:46984. The start and the end of the LTR are: 34426:46984.

Could you help me to solve this problem? Thank you.

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