Merge pull request #28 from BirdsCanada/dev

Author: steffilazerte

.Rbuildignore

@@ -9,4 +9,6 @@
 ^CODE_DESIGN.md$
 ^\.github$
 ^vignettes/articles$
-^misc$
+^misc$
+^\.vscode$
+^[.]?air[.]toml$

.vscode/extensions.json

@@ -0,0 +1,5 @@
+{
+    "recommendations": [
+        "Posit.air-vscode"
+    ]
+}

.vscode/settings.json

@@ -0,0 +1,79 @@
+{
+    "[r]": {
+        "editor.formatOnSave": true,
+        "editor.defaultFormatter": "Posit.air-vscode"
+    },
+    "[quarto]": {
+        "editor.formatOnSave": true,
+        "editor.defaultFormatter": "quarto.quarto"
+    },
+    "cSpell.words": [
+        "ABATLAS",
+        "ABBIRDRECS",
+        "ABOWLS",
+        "ACCWS",
+        "askpass",
+        "ATBANS",
+        "ATOWLS",
+        "bcch",
+        "Beaverhill",
+        "birdscanada",
+        "BMDE",
+        "bootswatch",
+        "Botaurus",
+        "BSCDATA",
+        "Butor",
+        "cosewic",
+        "creds",
+        "d'Amérique",
+        "dbplyr",
+        "DEJU",
+        "Designatable",
+        "Distrito",
+        "dont",
+        "envir",
+        "États",
+        "gdal",
+        "ggspatial",
+        "ggtitle",
+        "hofi",
+        "httr",
+        "indiv",
+        "jsonlite",
+        "Landcover",
+        "lentiginosus",
+        "Lepage",
+        "lineheight",
+        "longlat",
+        "Manip",
+        "mesange",
+        "mésange",
+        "mult",
+        "MYWA",
+        "noire",
+        "nrecords",
+        "ORJU",
+        "prettymapr",
+        "RCBIOTABASE",
+        "Renviron",
+        "returnclass",
+        "rosm",
+        "rspm",
+        "rumped",
+        "SKATLAS",
+        "statprov",
+        "stringi",
+        "Subnational",
+        "Tamiini",
+        "testuser",
+        "tete",
+        "tête",
+        "tibblify",
+        "tidyselect",
+        "ubox",
+        "vdiffr",
+        "webshot",
+        "YRWA",
+        "zoomin"
+    ]
+}

CODE_DESIGN.md

@@ -8,7 +8,7 @@
 - API urls
   - are stored in `meta_info`, a tibble created in `data-raw/data_creation.R`
   - This is where you can change from main to sandbox versions
-  - https://birdscanada.org/api vs. https://sandbox.birdscanada.org/api
+  - https://naturecounts.ca/api vs. https://sandbox.naturecounts.ca/api
   - To apply this you must **re-run** `data-raw/data_creation.R` and then
     **re-load** the functions/package
 

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: naturecounts
 Type: Package
 Title: Access and download data on plant and animal populations from NatureCounts
-Version: 0.4.1
+Version: 0.5.0
 Authors@R: c(
     person("Steffi", "LaZerte", email = "steffi@steffi.ca", role = "aut"),
     person("Denis", "Lepage", email = "dlepage@birdscanada.org", role = c("aut", "cre")))
@@ -11,8 +11,8 @@ Description: Access and download data on plant and animal populations from
 License: GPL-3
 Encoding: UTF-8
 LazyData: true
-Depends:
-    R (>= 3.1.2)
+Depends: 
+    R (>= 3.5)
 Imports: 
     askpass (>= 1.1),
     DBI (>= 1.0.0),
@@ -34,23 +34,28 @@ Imports:
     tidyselect (>= 1.0.0),
     units (>= 0.8.1),
     wk (>= 0.7.1)
-Suggests: 
-    ggspatial,
+Suggests:
+    ggspatial (>= 1.1.10),
     here,
     knitr,
     mapview,
+    patchwork,
+    prettymapr (>= 0.2.5),
+    rmarkdown,
     rnaturalearth,
+    rnaturalearthhires,
+    rosm,
     roxygen2,
-    rmarkdown,
     sf (>= 1.0-9),
     spelling,
     testthat,
     vdiffr
 Language: en-US
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 URL: https://github.com/BirdsCanada/naturecounts,
     https://naturecounts.ca,
     https://birdscanada.github.io/naturecounts/
 VignetteBuilder: knitr
 Config/testthat/edition: 3
+Remotes: ropensci/rnaturalearthhires

NAMESPACE

@@ -27,6 +27,7 @@ export(meta_utm_squares)
 export(nc_count)
 export(nc_data_dl)
 export(nc_metadata)
+export(nc_metadata_version)
 export(nc_permissions)
 export(nc_query_table)
 export(nc_remove_cache)

NEWS.md

@@ -1,3 +1,25 @@
+# naturecounts 0.5.0
+* Generalize `cosewic_ranges()` (fixes [#40](https://github.com/BirdsCanada/naturecounts/issues/40))
+    * argument *species* now deprecated in favour of *group*
+    * Add option to supply custom IAO grid to `cosewic_ranges()`
+    * Add option to clip EOO in `cosewic_ranges()` to a particular shapefile before calculating area
+    * Add option to change the CRS
+    * Update default CRS for `cosewic_ranges()` to an Albers Equal Area Projection for Canada (ESRI:102001)
+    * Use a general `prop_include = 1` rather than `eoo_p = 1` and default to 1 rather than 0.95.
+* Make `cosewic_plot()`s report-ready (fixes [#41](https://github.com/BirdsCanada/naturecounts/issues/41))
+    * Add option to scale records in `cosewic_plot()`
+    * Add North arrow and scale to `cosweic_plot()`
+    * Add option to change the CRS
+    * Add more details to `cosewic_plot()` caption
+* Change API to naturecounts.ca ([#29](https://github.com/BirdsCanada/naturecounts/issues/29))
+* Fix bug with request ids where tried to download unapproved collections  ([#32](https://github.com/BirdsCanada/naturecounts/issues/32))
+* Clarify metadata (fixes [#30](https://github.com/BirdsCanada/naturecounts/issues/30)
+    * Clarify metadata versions as dates
+    * Clarify which metadata is stored locally
+    * Add checks and warn users if local metadata >4 weeks old
+* Make 'extended' the default field set ([#31](https://github.com/BirdsCanada/naturecounts/issues/31))
+* Explicitly alert users if `format_zero_fill()` used when there are 'X' values ([#8](https://github.com/BirdsCanada/naturecounts/issues/8))
+
 # naturecounts 0.4.1
 * Fix use of species_id and record_id in `cosewic_ranges()`.
   * Truly allow different columns