test coverage: test use_apical_points in the config during test_run_combos

Author: anilbey

bluepymm/tests/test_run_combos.py

@@ -54,3 +54,8 @@ def test_run_combos():
 
         # verify output
         _verify_run_combos_output(config['scores_db'])
+
+        # with use_apical_points
+        config['use_apical_points'] = False
+        run_combos.main.run_combos_from_conf(config)
+        _verify_run_combos_output(config['scores_db'])

setup.py

@@ -27,7 +27,7 @@
     name="bluepymm",
     version=versioneer.get_version(),
     cmdclass=versioneer.get_cmdclass(),
-    install_requires=['sh', 'bluepyopt', 'matplotlib', 'pandas', 'numpy',
+    install_requires=['sh', 'bluepyopt', 'matplotlib', 'pandas', 'numpy', 'NEURON',
                       'ipyparallel', 'lxml', 'h5py', 'pyyaml'],
     packages=setuptools.find_packages(exclude=('notebook',)),
     author="BlueBrain Project, EPFL",

tox.ini

@@ -21,9 +21,9 @@ setenv =
     PYTHONPATH={env:TOX_NRNDIR}/local/lib/python:{env:TOX_NRNDIR}/local/lib64/python
 commands =
     make clean
-    ./.install_neuron.sh {env:TOX_NRNDIR}/src {env:TOX_NRNDIR}/local {basepython} 
+    ; ./.install_neuron.sh {env:TOX_NRNDIR}/src {env:TOX_NRNDIR}/local {basepython} 
 
-    make toxbinlinks
+    ; make toxbinlinks
 
     make simple1_git
     style: pycodestyle --ignore=E402,W503,W504 bluepymm