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1 | 1 | |banner| |
2 | 2 |
|
3 | | -|release| |docs| |license| |build| |coverage| |gitter| |
4 | | - |
5 | 3 | BluePyOpt |
6 | 4 | ========= |
7 | 5 |
|
| 6 | +.. raw:: html |
| 7 | + |
| 8 | + <table> |
| 9 | + <tr> |
| 10 | + <td>Latest Release</td> |
| 11 | + <td> |
| 12 | + <a href="https://pypi.org/project/bluepyopt/"> |
| 13 | + <img src="https://img.shields.io/pypi/v/bluepyopt.svg" alt="latest release" /> |
| 14 | + </a> |
| 15 | + </td> |
| 16 | + </tr> |
| 17 | + <tr> |
| 18 | + <td>Documentation</td> |
| 19 | + <td> |
| 20 | + <a href="https://bluepyopt.readthedocs.io/"> |
| 21 | + <img src="https://readthedocs.org/projects/bluepyopt/badge/?version=latest" alt="latest documentation" /> |
| 22 | + </a> |
| 23 | + </td> |
| 24 | + </tr> |
| 25 | + <tr> |
| 26 | + <td>License</td> |
| 27 | + <td> |
| 28 | + <a href="https://github.com/BlueBrain/bluepyopt/blob/master/LICENSE.txt"> |
| 29 | + <img src="https://img.shields.io/pypi/l/bluepyopt.svg" alt="license" /> |
| 30 | + </a> |
| 31 | + </td> |
| 32 | + </tr> |
| 33 | + <tr> |
| 34 | + <td>Build Status</td> |
| 35 | + <td> |
| 36 | + <a href="https://github.com/BlueBrain/BluePyOpt/actions"> |
| 37 | + <img src="https://github.com/BlueBrain/BluePyOpt/workflows/Build/badge.svg?branch=master" alt="Actions build status" /> |
| 38 | + </a> |
| 39 | + </td> |
| 40 | + </tr> |
| 41 | + <tr> |
| 42 | + <td>Coverage</td> |
| 43 | + <td> |
| 44 | + <a href="https://codecov.io/gh/BlueBrain/bluepyopt"> |
| 45 | + <img src="https://codecov.io/github/BlueBrain/BluePyOpt/coverage.svg?branch=master" alt="coverage" /> |
| 46 | + </a> |
| 47 | + </td> |
| 48 | + </tr> |
| 49 | + <tr> |
| 50 | + <td>Gitter</td> |
| 51 | + <td> |
| 52 | + <a href="https://gitter.im/bluebrain/bluepyopt"> |
| 53 | + <img src="https://badges.gitter.im/Join%20Chat.svg" |
| 54 | + </a> |
| 55 | + </td> |
| 56 | + </tr> |
| 57 | + </table> |
| 58 | + |
| 59 | + |
8 | 60 |
|
9 | 61 | Introduction |
10 | 62 | ============ |
@@ -32,7 +84,6 @@ When you use the BluePyOpt software or method for your research, we ask you to c |
32 | 84 |
|
33 | 85 | .. code-block:: |
34 | 86 |
|
35 | | - bibtex |
36 | 87 | @ARTICLE{bluepyopt, |
37 | 88 | AUTHOR={Van Geit, Werner and Gevaert, Michael and Chindemi, Giuseppe and Rössert, Christian and Courcol, Jean-Denis and Muller, Eilif Benjamin and Schürmann, Felix and Segev, Idan and Markram, Henry}, |
38 | 89 | TITLE={BluePyOpt: Leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience}, |
|
56 | 107 | - 2016/11/10: BluePyOpt now supports NEURON point processes. This means we can fit parameters of Adex/GIF/Izhikevich models, and also synapse models. |
57 | 108 | - 2016/06/14: Started a wiki: https://github.com/BlueBrain/BluePyOpt/wiki |
58 | 109 | - 2016/06/07: The BluePyOpt paper was published in Frontiers in Neuroinformatics (for link, see above) |
59 | | -- 2016/05/03: The API documentation was moved to [ReadTheDocs](http://bluepyopt.readthedocs.io/en/latest/) |
| 110 | +- 2016/05/03: The API documentation was moved to `ReadTheDocs <http://bluepyopt.readthedocs.io/en/latest/>`_ |
60 | 111 | - 2016/04/20: BluePyOpt now contains the code of the IBEA selector, no need to install a BBP-specific version of DEAP anymore |
61 | 112 | - 2016/03/24: Released version 1.0 |
62 | 113 |
|
@@ -148,27 +199,12 @@ This project/research was supported by funding to the Blue Brain Project, a rese |
148 | 199 |
|
149 | 200 | © 2016-2021, Blue Brain Project/EPFL |
150 | 201 |
|
151 | | -.. |release| image:: https://img.shields.io/pypi/v/bluepyopt.svg |
152 | | - :target: https://pypi.org/project/bluepyopt |
153 | | - |
154 | | -.. |docs| image:: https://readthedocs.org/projects/bluepyopt/badge/?version=latest |
155 | | - :target: https://bluepyopt.readthedocs.io/ |
156 | | - |
157 | | -.. |license| image:: https://img.shields.io/pypi/l/bluepyopt.svg |
158 | | - :target: https://github.com/BlueBrain/bluepyopt/blob/master/LICENSE.txt |
159 | | - |
160 | | -.. |build| image:: https://github.com/BlueBrain/BluePyOpt/workflows/Build/badge.svg?branch=master |
161 | | - :target: https://github.com/BlueBrain/BluePyOpt/actions |
162 | | - |
163 | | -.. |coverage| image:: hhttps://codecov.io/github/BlueBrain/BluePyOpt/coverage.svg?branch=master |
164 | | - :target: https://codecov.io/gh/BlueBrain/bluepyopt |
165 | | - |
166 | | -.. |gitter| image:: https://badges.gitter.im/Join%20Chat.svg |
167 | | - :target: https://gitter.im/bluebrain/bluepyopt |
168 | | - |
169 | 202 | .. |
170 | | - The following image must also be defined in the index.rst file for unknown reasons. |
171 | | - The phrase ".. substitutions" must not be removed. Function: unknown |
| 203 | + The following image is also defined in the index.rst file, as the relative path is |
| 204 | + different, depending from where it is sourced. |
| 205 | + The following location is used for the github README |
| 206 | + The index.rst location is used for the docs README; index.rst also defined an end-marker, |
| 207 | + to skip content after the marker 'substitutions'. |
172 | 208 |
|
173 | 209 | .. substitutions |
174 | 210 | .. |banner| image:: docs/source/logo/BluePyOptBanner.png |
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