Merge pull request #364 from BlueBrain/coverage

Add coverage checking on codecov

Author: wvangeit

.codeclimate.yml

@@ -0,0 +1,2 @@
+[run]
+omit = */tests/*

.coveragerc

@@ -30,6 +30,11 @@ jobs:
         pip install tox tox-gh-actions
     - name: Run tox
       run: tox
+    - name: "Upload coverage to Codecov"
+      uses: codecov/codecov-action@v1
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        fail_ci_if_error: false
 
   build-n-publish:
     if: github.ref == 'refs/heads/master' && github.event_name == 'push'

.github/workflows/main.yml

@@ -67,7 +67,7 @@ clean:
 	rm -rf examples/l5pc/L5PC.py
 	rm -rf examples/l5pc/x86_64
 	rm -rf examples/stochkv/x86_64
-	rm -rf .coverage
+	rm -rf .coverage*
 	find . -name "*.pyc" -exec rm -rf {} \;
 l5pc_start: install
 	cd examples/l5pc && \

Makefile

@@ -21,7 +21,7 @@ deps =
     neuron-nightly
     sh
     pathlib
-    pytest
+    pytest-cov
 download = true
 whitelist_externals =
     make
@@ -36,8 +36,8 @@ commands =
     style: pycodestyle --ignore=E402,W503,W504 bluepyopt
     syntax: flake8 . --count --select=E9,F63,F72,F82 --show-source --statistics
 
-    unit: pytest bluepyopt/tests -k unit
-    functional: pytest bluepyopt/tests -k-unit
+    unit: pytest --cov=bluepyopt --cov-append --cov-report=xml bluepyopt/tests -k unit
+    functional: pytest --cov=bluepyopt --cov-append --cov-report=xml bluepyopt/tests -k-unit
 
 [testenv:docs]
 basepython = python3.6