Run simulation with different mod files if they are not used, Fixes #54 (#140)

- Added a global vector that stores the different mod files between Neuron and CoreNeuron
- Search this vector when a mod file is read to be used in the simulation and if it is found exit, else continue simulation

Author: iomaganaris

coreneuron/nrniv/nrn_setup.cpp

@@ -263,6 +263,9 @@ std::vector<NetCon*> netcon_in_presyn_order_;
 /// Only for setup vector of netcon source gids
 std::vector<int*> netcon_srcgid;
 
+/// Vector storing indexes (IDs) of different mechanisms of mod files between Neuron and CoreNeuron
+extern std::vector<int> different_mechanism_type;
+
 // Wrap read_phase1 and read_phase2 calls to allow using  nrn_multithread_job.
 // Args marshaled by store_phase_args are used by phase1_wrapper
 // and phase2_wrapper.
@@ -1137,10 +1140,31 @@ void read_phase2(FileHandler& F, int imult, NrnThread& nt) {
         nmech = F.read_int();
         tml_index = new int[nmech];
         ml_nodecount = new int[nmech];
+        int diff_mech_count = 0;
         for (int i = 0; i < nmech; ++i) {
             tml_index[i] = F.read_int();
             ml_nodecount[i] = F.read_int();
+            auto mechanism_differs =
+                std::find(different_mechanism_type.begin(), different_mechanism_type.end(),
+                          tml_index[i]) != different_mechanism_type.end();
+            if (mechanism_differs) {
+                if (nrnmpi_myid == 0) {
+                    printf("Error: %s is a different MOD file than used by NEURON!\n",
+                           nrn_get_mechname(tml_index[i]));
+                }
+                diff_mech_count++;
+            }
+        }
+
+        if (diff_mech_count > 0) {
+            if (nrnmpi_myid == 0) {
+                printf(
+                    "Error : NEURON and CoreNEURON must use same mod files for compatibility, %d different mod file(s) found. Re-compile special and special-core!\n",
+                    diff_mech_count);
+            }
+            nrn_abort(1);
         }
+
         nt._nidata = F.read_int();
         nt._nvdata = F.read_int();
         nt.n_weight = F.read_int();
@@ -2204,4 +2228,5 @@ size_t model_size(void) {
 
     return nbyte;
 }
+
 }  // namespace coreneuron

coreneuron/nrnoc/register_mech.cpp

@@ -35,6 +35,7 @@ THE POSSIBILITY OF SUCH DAMAGE.
 #include "coreneuron/nrnmpi/nrnmpi.h"
 #include "coreneuron/nrnoc/mech_mapping.hpp"
 #include "coreneuron/nrnoc/membfunc.h"
+#include <vector>
 
 namespace coreneuron {
 int secondorder = 0;
@@ -86,6 +87,10 @@ static int ion_write_depend_size_;
 static int** ion_write_depend_;
 static void ion_write_depend(int type, int etype);
 
+/* Vector keeping the types (IDs) of different mechanisms of mod files between Neuron and CoreNeuron
+ */
+std::vector<int> different_mechanism_type;
+
 bbcore_read_t* nrn_bbcore_read_;
 bbcore_write_t* nrn_bbcore_write_;
 void hoc_reg_bbcore_read(int type, bbcore_read_t f) {
@@ -275,11 +280,7 @@ void hoc_register_prop_size(int type, int psize, int dpsize) {
     pold = nrn_prop_param_size_[type];
     dpold = nrn_prop_dparam_size_[type];
     if (psize != pold || dpsize != dpold) {
-        printf("%s prop sizes differ psize %d %d   dpsize %d %d\n", memb_func[type].sym, psize,
-               pold, dpsize, dpold);
-        printf("Error: %s is different version of MOD file than the one used by NEURON!\n",
-               memb_func[type].sym);
-        exit(1);
+        different_mechanism_type.push_back(type);
     }
     nrn_prop_param_size_[type] = psize;
     nrn_prop_dparam_size_[type] = dpsize;