Enable GPU builds under Jenkins (#212)

 - set missing LIBRARY_OUTPUT_DIRECTORY for libcudacoreneuron

Author: pramodk

README.md

@@ -68,7 +68,7 @@ With the latest master branch, the workflow of building CoreNEURON is same as th
 
 ## Building with GPU support
 
-CoreNEURON has support for GPUs using the OpenACC programming model when enabled with `-DENABLE_OPENACC=ON`. Below are the steps to compile with PGI compiler:
+CoreNEURON has support for GPUs using the OpenACC programming model when enabled with `-DCORENRN_ENABLE_GPU=ON`. Below are the steps to compile with PGI compiler:
 
 ```bash
 module purge
@@ -83,7 +83,7 @@ cmake ..  -DCMAKE_C_FLAGS:STRING="-O2" \
           -DCOMPILE_LIBRARY_TYPE=STATIC \
           -DCUDA_HOST_COMPILER=`which gcc` \
           -DCUDA_PROPAGATE_HOST_FLAGS=OFF \
-          -DENABLE_OPENACC=ON
+          -DCORENRN_ENABLE_GPU=ON
 ```
 
 Note that the CUDA Toolkit version should be compatible with PGI compiler installed on your system. Otherwise you have to add extra C/C++ flags. For example, if we are using CUDA Toolkit 9.0 installation but PGI default target is CUDA 8.0 then we have to add :
@@ -229,4 +229,4 @@ See [contributors](https://github.com/BlueBrain/CoreNeuron/graphs/contributors).
 
 ## Funding
 
-CoreNEURON is developed in a joint collaboration between the Blue Brain Project and Yale University. This work has been funded by the EPFL Blue Brain Project (funded by the Swiss ETH board), NIH grant number R01NS11613 (Yale University), the European Union Seventh Framework Program (FP7/20072013) under grant agreement n◦ 604102 (HBP) and the Eu- ropean Union’s Horizon 2020 Framework Programme for Research and Innovation under Grant Agreement n◦ 720270 (Human Brain Project SGA1) and Grant Agreement n◦ 785907 (Human Brain Project SGA2).
+CoreNEURON is developed in a joint collaboration between the Blue Brain Project and Yale University. This work has been funded by the EPFL Blue Brain Project (funded by the Swiss ETH board), NIH grant number R01NS11613 (Yale University), the European Union Seventh Framework Program (FP7/20072013) under grant agreement n◦ 604102 (HBP) and the Eu- ropean Union’s Horizon 2020 Framework Programme for Research and Innovation under Grant Agreement n◦ 720270 (Human Brain Project SGA1) and Grant Agreement n◦ 785907 (Human Brain Project SGA2).

coreneuron/CMakeLists.txt

@@ -170,7 +170,7 @@ target_link_libraries(coreneuron
 
 target_link_libraries(corenrnmech scopmath coreneuron)
 
-set_target_properties(coreneuron corenrnmech scopmath
+set_target_properties(coreneuron corenrnmech scopmath ${link_cudacoreneuron}
                       PROPERTIES ARCHIVE_OUTPUT_DIRECTORY
                                  ${CMAKE_BINARY_DIR}/lib
                                  LIBRARY_OUTPUT_DIRECTORY

tests/jenkins/install_coreneuron.sh

@@ -28,9 +28,8 @@ if [ "${CORENRN_TYPE}" = "GPU-non-unified" ]; then
         -DCOMPILE_LIBRARY_TYPE=STATIC  \
         -DCUDA_HOST_COMPILER=`which gcc` \
         -DCUDA_PROPAGATE_HOST_FLAGS=OFF \
-        -DENABLE_SELECTIVE_GPU_PROFILING=ON \
-        -DENABLE_OPENACC=ON \
-        -DENABLE_UNIFIED=OFF \
+        -DCORENRN_ENABLE_GPU=ON \
+        -DCORENRN_ENABLE_CUDA_UNIFIED_MEMORY=OFF \
         -DCMAKE_INSTALL_PREFIX=$WORKSPACE/install_${CORENRN_TYPE}/ \
         -DTEST_MPI_EXEC_BIN="srun;--exclusive;--account=proj16;--partition=interactive;--constraint=volta;--gres=gpu:1;--mem;0;-t;00:05:00" \
         -DTEST_EXEC_PREFIX="srun;-n;6;--exclusive;--account=proj16;--partition=interactive;--constraint=volta;--gres=gpu:1;--mem;0;-t;00:05:00" \
@@ -44,9 +43,8 @@ elif [ "${CORENRN_TYPE}" = "GPU-unified" ]; then
         -DCOMPILE_LIBRARY_TYPE=STATIC  \
         -DCUDA_HOST_COMPILER=`which gcc` \
         -DCUDA_PROPAGATE_HOST_FLAGS=OFF \
-        -DENABLE_SELECTIVE_GPU_PROFILING=ON \
-        -DENABLE_OPENACC=ON \
-        -DENABLE_UNIFIED=ON \
+        -DCORENRN_ENABLE_GPU=ON \
+        -DCORENRN_ENABLE_CUDA_UNIFIED_MEMORY=ON \
         -DCMAKE_INSTALL_PREFIX=$WORKSPACE/install_${CORENRN_TYPE}/ \
         -DTEST_MPI_EXEC_BIN="srun;--exclusive;--account=proj16;--partition=interactive;--constraint=volta;--gres=gpu:1;--mem;0;-t;00:05:00" \
         -DTEST_EXEC_PREFIX="srun;-n;6;--exclusive;--account=proj16;--partition=interactive;--constraint=volta;--gres=gpu:1;--mem;0;-t;00:05:00" \