MCD files generated with the slide loader always appear corrupted

[givison]

My lab acquired a slide loader for the hyperion XTi system, but it seems like whenever steinbock reads the images it says the files are corrupted. MCD viewer doesn't seem to have any issue with the files.

This is the message that printed with one of our recent acquisitions:

/opt/steinbock-venv/lib/python3.8/site-packages/readimc/mcd_parser.py:131: UserWarning: Slide 0 corrupted: overlapping memory blocks for acquisitions 1 and 2
  warn(
/opt/steinbock-venv/lib/python3.8/site-packages/readimc/mcd_parser.py:131: UserWarning: Slide 0 corrupted: overlapping memory blocks for acquisitions 1 and 5
  warn(

No txt file is being generated with these acquisitions, so recovery isn't possible.

[victorjonathanibanez]

@givison This issue is related to readimc, not steinbock itself. Can you tell me what version of readimc you are using? Are you running steinbock through a pip installation or with a docker container?

[givison]

That makes sense. I'm using docker, and I've had this issue with both the GPU based and non-GPU based versions of 0.16.3. I'm not familiar enough with docker to figure out which version of readimc is in the container