reset defaults for combineBCR()

ncborcherding · ncborcherding · commit dcbeb01c22ea · 2025-12-03T12:54:04.000-06:00
diff --git a/R/combineContigs.R b/R/combineContigs.R
@@ -216,8 +216,8 @@ combineBCR <- function(input.data,
                        chain = "both",
                        sequence = "nt",
                        dist_type = "levenshtein",
-                       dist_mat = "BLOSUM62",
-                       normalize = "none",
+                       dist_mat = "BLOSUM80",
+                       normalize = "length",
                        gap_open = -10,
                        gap_extend = -1,
                        call.related.clones = TRUE,
