fix(docs): correct broken links and automate version sync

  - Fix GitHub repository URLs from atomic-monorepo to atomic-agents
  - Update llms.txt download links to use _static directory
  - Sync documentation version from 1.1.0 to 2.0.4
  - Add automatic version synchronization script
  - Update GitHub workflow to copy llms files to proper location

Author: KennyVaneetvelde

.github/workflows/docs.yml

@@ -36,6 +36,10 @@ jobs:
           pip install poetry
           poetry install
 
+      - name: Sync version from pyproject.toml
+        run: |
+          poetry run python scripts/sync_version.py
+      
       - name: Build documentation
         run: |
           cd docs
@@ -48,9 +52,10 @@ jobs:
           
       - name: Copy llms files to build directory
         run: |
-          cp docs/llms-*.txt docs/_build/html/
+          mkdir -p docs/_build/html/_static
+          cp docs/llms-*.txt docs/_build/html/_static/
           echo "Generated llms files:"
-          ls -lh docs/_build/html/llms-*.txt
+          ls -lh docs/_build/html/_static/llms-*.txt
 
       - name: Upload artifact
         uses: actions/upload-pages-artifact@v3

docs/conf.py

@@ -6,8 +6,8 @@
 project = "Atomic Agents"
 copyright = "2024, Kenny Vaneetvelde"
 author = "Kenny Vaneetvelde"
-version = "1.1.0"
-release = "1.1.0"
+version = "2.0.4"
+release = "2.0.4"
 
 extensions = [
     "sphinx.ext.autodoc",

docs/examples/index.md

@@ -4,8 +4,8 @@ This section contains detailed examples of using Atomic Agents in various scenar
 
 ```{note}
 All examples are available in optimized formats for AI assistants:
-- **[Examples with documentation](../llms-examples.txt)** - All examples with source code and READMEs
-- **[Full framework package](../llms-full.txt)** - Complete documentation, source, and examples
+- **[Examples with documentation](../_static/llms-examples.txt)** - All examples with source code and READMEs
+- **[Full framework package](../_static/llms-full.txt)** - Complete documentation, source, and examples
 ```
 
 ## Quickstart Examples
@@ -18,7 +18,7 @@ Simple examples to get started with the framework:
 - Custom input/output schemas
 - Multiple provider support
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/quickstart)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/quickstart)** - Browse the complete source code and run the examples
 
 ## Basic Multimodal
 
@@ -29,7 +29,7 @@ Examples of working with images and text:
 - Visual content generation
 - Multi-image comparisons
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/basic-multimodal)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/basic-multimodal)** - Browse the complete source code and run the examples
 
 ## RAG Chatbot
 
@@ -41,7 +41,7 @@ Build context-aware chatbots with retrieval-augmented generation:
 - Source attribution
 - Follow-up suggestions
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/rag-chatbot)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/rag-chatbot)** - Browse the complete source code and run the examples
 
 ## Web Search Agent
 
@@ -53,7 +53,7 @@ Create agents that can search and analyze web content:
 - Multi-source research
 - Citation tracking
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/web-search-agent)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/web-search-agent)** - Browse the complete source code and run the examples
 
 ## Deep Research
 
@@ -65,7 +65,7 @@ Perform comprehensive research tasks:
 - Structured output generation
 - Citation management
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/deep-research)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/deep-research)** - Browse the complete source code and run the examples
 
 ## YouTube Summarizer
 
@@ -77,7 +77,7 @@ Extract and analyze information from videos:
 - Timestamp linking
 - Chapter generation
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/youtube-summarizer)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/youtube-summarizer)** - Browse the complete source code and run the examples
 
 ## YouTube to Recipe
 
@@ -89,7 +89,7 @@ Convert cooking videos into structured recipes:
 - Step-by-step instructions
 - Time and temperature conversion
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/youtube-to-recipe)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/youtube-to-recipe)** - Browse the complete source code and run the examples
 
 ## Orchestration Agent
 
@@ -101,7 +101,7 @@ Coordinate multiple agents for complex tasks:
 - Error handling
 - Result aggregation
 
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/orchestration-agent)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/orchestration-agent)** - Browse the complete source code and run the examples
 
 ## MCP Agent
 
@@ -114,4 +114,4 @@ Build intelligent agents using the Model Context Protocol:
 - Extensible tool architecture
 
 [View MCP Agent Documentation](mcp_agent.md)
-📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/mcp-agent)** - Browse the complete source code and run the examples
+📂 **[View on GitHub](https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/mcp-agent)** - Browse the complete source code and run the examples

docs/index.md

@@ -21,10 +21,10 @@ contributing
 
 Choose the resource that best fits your needs:
 
-- **[📚 Full Package](llms-full.txt)** - Complete documentation, source code, and examples in one file
-- **[📖 Documentation Only](llms-docs.txt)** - API documentation, guides, and references
-- **[💻 Source Code Only](llms-source.txt)** - Complete atomic-agents framework source code
-- **[🎯 Examples Only](llms-examples.txt)** - All example implementations with READMEs
+- **[📚 Full Package](_static/llms-full.txt)** - Complete documentation, source code, and examples in one file
+- **[📖 Documentation Only](_static/llms-docs.txt)** - API documentation, guides, and references
+- **[💻 Source Code Only](_static/llms-source.txt)** - Complete atomic-agents framework source code
+- **[🎯 Examples Only](_static/llms-examples.txt)** - All example implementations with READMEs
 
 All files are optimized for AI assistants and Large Language Models, with clear structure and formatting for easy parsing.
 ```

scripts/generate_llms_files.py

@@ -115,7 +115,7 @@ def generate_documentation_only() -> str:
     content = create_section_divider("ATOMIC AGENTS DOCUMENTATION", 1)
     content += "This file contains the complete documentation for the Atomic Agents framework.\n"
     content += "Generated for use with Large Language Models and AI assistants.\n"
-    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-monorepo\n"
+    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-agents\n"
 
     content += create_section_divider("DOCUMENTATION", 1)
     content += extract_documentation_from_html()
@@ -128,7 +128,7 @@ def generate_source_code_only() -> str:
     content = create_section_divider("ATOMIC AGENTS SOURCE CODE", 1)
     content += "This file contains the complete source code for the Atomic Agents framework.\n"
     content += "Generated for use with Large Language Models and AI assistants.\n"
-    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-monorepo\n"
+    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-agents\n"
 
     files = get_files_to_include(ATOMIC_AGENTS_DIR, SOURCE_CODE_EXTENSIONS)
 
@@ -143,7 +143,7 @@ def generate_examples_only() -> str:
     content = create_section_divider("ATOMIC AGENTS EXAMPLES", 1)
     content += "This file contains all example implementations using the Atomic Agents framework.\n"
     content += "Each example includes its README documentation and complete source code.\n"
-    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-monorepo\n"
+    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-agents\n"
 
     # Get all example directories
     example_dirs = [d for d in ATOMIC_EXAMPLES_DIR.iterdir() if d.is_dir() and d.name not in EXCLUDE_DIRS]
@@ -153,7 +153,7 @@ def generate_examples_only() -> str:
         content += create_section_divider(f"Example: {example_dir.name}", 2)
 
         # Add GitHub link
-        github_url = f"https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/{example_dir.name}"
+        github_url = f"https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/{example_dir.name}"
         content += f"**View on GitHub:** {github_url}\n\n"
 
         # Process README first if it exists
@@ -184,7 +184,7 @@ def generate_full_content() -> str:
     content = create_section_divider("ATOMIC AGENTS - COMPREHENSIVE DOCUMENTATION, SOURCE CODE, AND EXAMPLES", 1)
     content += "This file contains the complete documentation, source code, and examples for the Atomic Agents framework.\n"
     content += "Generated for use with Large Language Models and AI assistants.\n"
-    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-monorepo\n"
+    content += f"Project Repository: https://github.com/BrainBlend-AI/atomic-agents\n"
     content += f"\nTable of Contents:\n"
     content += "1. Documentation\n"
     content += "2. Atomic Agents Source Code\n"
@@ -214,7 +214,7 @@ def generate_full_content() -> str:
     for example_dir in example_dirs:
         content += create_section_divider(f"Example: {example_dir.name}", 2)
 
-        github_url = f"https://github.com/BrainBlend-AI/atomic-monorepo/tree/main/atomic-examples/{example_dir.name}"
+        github_url = f"https://github.com/BrainBlend-AI/atomic-agents/tree/main/atomic-examples/{example_dir.name}"
         content += f"**View on GitHub:** {github_url}\n\n"
 
         readme_files = list(example_dir.glob("README.*"))
@@ -236,7 +236,7 @@ def generate_full_content() -> str:
 
     content += create_section_divider("END OF DOCUMENT", 1)
     content += "This comprehensive documentation was generated for use with AI assistants and LLMs.\n"
-    content += "For the latest version, please visit: https://github.com/BrainBlend-AI/atomic-monorepo\n"
+    content += "For the latest version, please visit: https://github.com/BrainBlend-AI/atomic-agents\n"
 
     return content
 

scripts/sync_version.py

@@ -0,0 +1,63 @@
+#!/usr/bin/env python3
+"""
+Sync version from pyproject.toml to docs/conf.py
+"""
+
+import re
+from pathlib import Path
+
+# Define paths
+PROJECT_ROOT = Path(__file__).parent.parent
+PYPROJECT_FILE = PROJECT_ROOT / "pyproject.toml"
+DOCS_CONF_FILE = PROJECT_ROOT / "docs" / "conf.py"
+
+def get_version_from_pyproject():
+    """Extract version from pyproject.toml using regex"""
+    with open(PYPROJECT_FILE, 'r') as f:
+        content = f.read()
+    
+    # Look for version line in [tool.poetry] section
+    match = re.search(r'^version = ["\'](.*?)["\']', content, re.MULTILINE)
+    if match:
+        return match.group(1)
+    else:
+        raise ValueError("Could not find version in pyproject.toml")
+
+def update_docs_conf(version):
+    """Update version in docs/conf.py"""
+    with open(DOCS_CONF_FILE, 'r') as f:
+        content = f.read()
+    
+    # Replace version line
+    content = re.sub(
+        r'^version = "[^"]*"$',
+        f'version = "{version}"',
+        content,
+        flags=re.MULTILINE
+    )
+    
+    # Replace release line
+    content = re.sub(
+        r'^release = "[^"]*"$',
+        f'release = "{version}"',
+        content,
+        flags=re.MULTILINE
+    )
+    
+    with open(DOCS_CONF_FILE, 'w') as f:
+        f.write(content)
+    
+    print(f"Updated docs/conf.py to version {version}")
+
+def main():
+    """Main function"""
+    try:
+        version = get_version_from_pyproject()
+        print(f"Found version {version} in pyproject.toml")
+        update_docs_conf(version)
+    except Exception as e:
+        print(f"Error: {e}")
+        exit(1)
+
+if __name__ == "__main__":
+    main()