Merge pull request #63 from C2SM/euler

Add Euler support and update to Python 3.11

Author: mjaehn

cases/cosmo-ghg-spinup-test/config.yaml

@@ -48,7 +48,7 @@ online_vprm:
 int2lm:
     extpar_dir: ./input/cosmo-ghg/extpar
     extpar_filename: test_domain.nc
-    binary_file: ./ext/int2lm/test/testsuite/int2lm
+    binary_file: ./ext/int2lm/TESTSUITE/int2lm
     namelist_filename: int2lm_INPUT.cfg
     runjob_filename: int2lm_runjob.cfg
     compute_queue: normal
@@ -84,7 +84,7 @@ reduce_output:
     output_levels: 20
 
 post_cosmo:
-    output_root: ./output/cosmo-ghg-spinup
+    output_root: ./output/cosmo-ghg-spinup-test
 
 verify_chain:
     reference_dir: null  # Set this value based on your use case

cases/cosmo-ghg-test/config.yaml

@@ -47,7 +47,7 @@ online_vprm:
 int2lm:
     extpar_dir: ./input/cosmo-ghg/extpar
     extpar_filename: test_domain.nc
-    binary_file: ./ext/int2lm/test/testsuite/int2lm
+    binary_file: ./ext/int2lm/TESTSUITE/int2lm
     namelist_filename: int2lm_INPUT.cfg
     runjob_filename: int2lm_runjob.cfg
     compute_queue: normal
@@ -83,7 +83,7 @@ reduce_output:
     output_levels: 20
 
 post_cosmo:
-    output_root: ./output/cosmo-ghg-spinup
+    output_root: ./output/cosmo-ghg-test
 
 verify_chain:
     reference_dir: null  # Set this value based on your use case

cases/icon-art-global-test/config.yaml

@@ -10,8 +10,8 @@ startdate: 2018-01-01T00:00:00Z
 enddate: 2018-01-01T12:00:00Z
 
 eccodes_dir: ./input/eccodes_definitions
-iconremap_bin: iconremap
-iconsub_bin: iconsub
+iconremap_bin: ./ext/icontools/icontools/iconremap
+iconsub_bin: ./ext/icontools/icontools/iconsub
 latbc_filename: ifs_<y><m><d><h>_lbc.nc
 inidata_prefix: ifs_init_
 inidata_nameformat: '%Y%m%d%H'

cases/icon-art-global-test/icon_runjob.cfg

@@ -389,11 +389,13 @@ EOF
 # run the model!
 # ----------------------------------------------------------------------
 handle_error(){{
+    set +e
     # Check for invalid pointer error at the end of icon-art
     if grep -q "free(): invalid pointer" {cfg.logfile} && grep -q "clean-up finished" {cfg.logfile}; then
         exit 0
     else
         exit 1
     fi
+    set -e
 }}
 srun ./{cfg.icon_execname} || handle_error

cases/icon-art-oem-test/config.yaml

@@ -10,8 +10,8 @@ startdate: 2018-01-01T00:00:00Z
 enddate: 2018-01-01T12:00:00Z
 
 eccodes_dir: ./input/eccodes_definitions
-iconremap_bin: iconremap
-iconsub_bin: iconsub
+iconremap_bin: ./ext/icontools/icontools/iconremap
+iconsub_bin: ./ext/icontools/icontools/iconsub
 latbc_filename: ifs_<y><m><d><h>_lbc.nc
 inidata_prefix: ifs_init_
 inidata_nameformat: '%Y%m%d%H'

cases/icon-art-oem-test/icon_runjob.cfg

@@ -369,11 +369,13 @@ EOF
 # run the model!
 # ----------------------------------------------------------------------
 handle_error(){{
+    set +e
     # Check for invalid pointer error at the end of icon-art
     if grep -q "free(): invalid pointer" {cfg.logfile} && grep -q "clean-up finished" {cfg.logfile}; then
         exit 0
     else
         exit 1
     fi
+    set -e
 }}
 srun ./{cfg.icon_execname} || handle_error

cases/icon-art-oem-test/icontools_remap_00_lbc_runjob.cfg

@@ -17,9 +17,6 @@ set -x
 
 export ECCODES_DEFINITION_PATH={cfg.eccodes_dir}/definitions.edzw-2.12.5-2:{cfg.eccodes_dir}/definitions
 
-. {cfg.chain_src_dir}/ext/spack-c2sm/setup-env.sh
-spack load icontools
-
 #-----------------------------------------------------------------------------
 # PART I: Create auxiliary grid file which contains only the cells of the 
 #         boundary zone.

cases/icon-art-oem-test/icontools_remap_ic_chem_runjob.cfg

@@ -17,9 +17,6 @@ set -e -x
 
 export ECCODES_DEFINITION_PATH={cfg.eccodes_dir}/definitions.edzw-2.12.5-2:{cfg.eccodes_dir}/definitions
 
-. {cfg.chain_src_dir}/ext/spack-c2sm/setup-env.sh
-spack load icontools
-
 #-----------------------------------------------------------------------------
 # Remap inital data onto local (limited-area) grid
 #-----------------------------------------------------------------------------

cases/icon-art-oem-test/icontools_remap_ic_runjob.cfg

@@ -17,9 +17,6 @@ set -x
 
 export ECCODES_DEFINITION_PATH={cfg.eccodes_dir}/definitions.edzw-2.12.5-2:{cfg.eccodes_dir}/definitions
 
-. {cfg.chain_src_dir}/ext/spack-c2sm/setup-env.sh
-spack load icontools
-
 #-----------------------------------------------------------------------------
 # Remap inital data onto local (limited-area) grid
 #-----------------------------------------------------------------------------

cases/icon-art-oem-test/icontools_remap_lbc_chem_runjob.cfg

@@ -17,9 +17,6 @@ set -e -x
 
 export ECCODES_DEFINITION_PATH={cfg.eccodes_dir}/definitions.edzw-2.12.5-2:{cfg.eccodes_dir}/definitions
 
-. {cfg.chain_src_dir}/ext/spack-c2sm/setup-env.sh
-spack load icontools
-
 #-----------------------------------------------------------------------------
 # Extract boundary data
 #-----------------------------------------------------------------------------