Installation of DLMUSE failed on cluster #81
Description
Hi,
I tried installing NiChart_DLMUSE on the cluster and it gave me an error below:
Collecting python-gdcm (from dicom2nifti->nnunetv2==2.5.1->DLICV->NiChart_DLMUSE==1.0.9)
Using cached python_gdcm-3.2.1.tar.gz (3.4 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... error
error: subprocess-exited-with-error
× Preparing metadata (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [28 lines of output]
*** scikit-build-core 0.9.10 using CMake 4.1.0 (wheel)
*** Configuring CMake...
loading initial cache file /scratch/psychanalysis/tmp.GOaaK94GZW/tmpdmx4e4wc/build/CMakeInit.txt
CMake Error: The source directory "/scratch/psychanalysis/tmp.GOaaK94GZW/pip-install-gztx2_08/python-gdcm_23874f23a8f64f9ba34489178ceede86" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
Traceback (most recent call last):
File "/cbica/projects/PsychAnalysis/.conda/envs/nichart-dlmuse/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 389, in
main()
File "/cbica/projects/PsychAnalysis/.conda/envs/nichart-dlmuse/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 373, in main
json_out["return_val"] = hook(**hook_input["kwargs"])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cbica/projects/PsychAnalysis/.conda/envs/nichart-dlmuse/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 178, in prepare_metadata_for_build_wheel
whl_basename = backend.build_wheel(metadata_directory, config_settings)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch/psychanalysis/tmp.GOaaK94GZW/pip-build-env-19wum7oz/overlay/lib/python3.12/site-packages/hatchling/build.py", line 58, in build_wheel
return os.path.basename(next(builder.build(directory=wheel_directory, versions=['standard'])))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch/psychanalysis/tmp.GOaaK94GZW/pip-build-env-19wum7oz/overlay/lib/python3.12/site-packages/hatchling/builders/plugin/interface.py", line 147, in build
build_hook.initialize(version, build_data)
File "/scratch/psychanalysis/tmp.GOaaK94GZW/pip-build-env-19wum7oz/overlay/lib/python3.12/site-packages/scikit_build_core/hatch/plugin.py", line 125, in initialize
self._initialize(build_data=build_data)
File "/scratch/psychanalysis/tmp.GOaaK94GZW/pip-build-env-19wum7oz/overlay/lib/python3.12/site-packages/scikit_build_core/hatch/plugin.py", line 226, in _initialize
builder.configure(
File "/scratch/psychanalysis/tmp.GOaaK94GZW/pip-build-env-19wum7oz/overlay/lib/python3.12/site-packages/scikit_build_core/builder/builder.py", line 237, in configure
self.config.configure(
File "/scratch/psychanalysis/tmp.GOaaK94GZW/pip-build-env-19wum7oz/overlay/lib/python3.12/site-packages/scikit_build_core/cmake.py", line 221, in configure
raise FailedLiveProcessError(msg) from None
scikit_build_core.errors.FailedLiveProcessError: CMake configuration failed
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
Here are the steps I followed:
1.Created conda environment.
2.git clone https://github.com/CBICA/NiChart_DLMUSE.git
3. cd NiChart_DLMUSE
4.ython3 -m pip install -e .