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Correct additional facet value participant counts (#157)
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src/main/java/gov/nih/nci/bento_ri/model/PrivateESDataFetcher.java

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -736,6 +736,7 @@ private Map<String, Object> searchParticipants(Map<String, Object> params) throw
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AGG_NAME, "diagnosis",
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WIDGET_QUERY, "participantCountByDiagnosis",
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FILTER_COUNT_QUERY, "filterParticipantCountByDiagnosis",
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ADDITIONAL_UPDATE, Map.of("Precursor cell lymphoblastic lymphoma, NOS", 2000, "see diagnosis_comment", 2000),
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AGG_ENDPOINT, DIAGNOSIS_END_POINT
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));
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PARTICIPANT_TERM_AGGS.add(Map.of(
@@ -836,7 +837,7 @@ private Map<String, Object> searchParticipants(Map<String, Object> params) throw
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CARDINALITY_AGG_NAME, "pid",
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AGG_NAME, "last_known_survival_status",
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FILTER_COUNT_QUERY, "filterParticipantCountBySurvivalStatus",
839-
ADDITIONAL_UPDATE, Map.of("Alive", 3500, "Unknown", 5000),
840+
ADDITIONAL_UPDATE, Map.of("Alive", 3500, "Dead", 1500, "Unknown", 5000),
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AGG_ENDPOINT, SURVIVALS_END_POINT
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));
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PARTICIPANT_TERM_AGGS.add(Map.of(
@@ -855,6 +856,7 @@ private Map<String, Object> searchParticipants(Map<String, Object> params) throw
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CARDINALITY_AGG_NAME, "pid",
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AGG_NAME, "sample_anatomic_site",
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FILTER_COUNT_QUERY, "filterParticipantCountBySampleAnatomicSite",
859+
ADDITIONAL_UPDATE, Map.of("C42.0 : Blood", 2000),
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AGG_ENDPOINT, SAMPLES_END_POINT
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));
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PARTICIPANT_TERM_AGGS.add(Map.of(
@@ -895,7 +897,7 @@ private Map<String, Object> searchParticipants(Map<String, Object> params) throw
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AGG_NAME, "data_category",
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WIDGET_QUERY, "participantCountByDataCategory",
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FILTER_COUNT_QUERY, "filterParticipantCountByDataCategory",
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ADDITIONAL_UPDATE, Map.of("Genomics", 1000, "Pathology Imaging", 1000, "Sequencing", 2000, "Clinical", 1500, "Copy Number Variation", 1000),
900+
ADDITIONAL_UPDATE, Map.of("Genomics", 1000, "Pathology Imaging", 1000, "Sequencing", 2000, "Clinical", 1500, "Copy Number Variation", 1000, "Methylation Analysis", 1, "Tumor Normal Clinical Data", 1500),
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AGG_ENDPOINT, FILES_END_POINT
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));
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PARTICIPANT_TERM_AGGS.add(Map.of(

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