Skip to content

Commit 5524ad9

Browse files
authored
Merge pull request #137 from CCPBioSim/version-updates
Update to workshop.json
2 parents 872d8cb + 8b5c2cc commit 5524ad9

File tree

1 file changed

+23
-23
lines changed

1 file changed

+23
-23
lines changed

workshop.json

Lines changed: 23 additions & 23 deletions
Original file line numberDiff line numberDiff line change
@@ -1,161 +1,161 @@
11
{
22
"containers": {
33
"jupyterhub-base": {
4-
"latest": "2026-02-23",
4+
"latest": "2026-03-02",
55
"name": "CCPBioSim Base Image",
66
"category": "infrastructure",
77
"shortdesc": "CCPBioSim JupyterHub base container for use in other training workshops.",
88
"longdesc": ""
99
},
1010
"structure-validation-uglymol": {
11-
"latest": "2026-02-23",
11+
"latest": "2026-03-02",
1212
"name": "Uglymol Image",
1313
"category": "infrastructure",
1414
"shortdesc": "Uglymol container for hosted deployment as part of the structure validation workshop.",
1515
"longdesc": ""
1616
},
1717
"structure-validation-workshop": {
18-
"latest": "2026-02-23",
18+
"latest": "2026-03-02",
1919
"name": "An Introduction to Structure Validation",
2020
"category": "setup",
2121
"shortdesc": "This course will introduce methods to deduce that starting structures for preparing simulations represent high quality starting points.",
2222
"longdesc": ""
2323
},
2424
"basic-statistics-workshop": {
25-
"latest": "2026-02-23",
25+
"latest": "2026-03-02",
2626
"name": "Introducing Basic Statistics",
2727
"category": "analysis",
2828
"shortdesc": "This course illustrates how basic statistical concepts can be applied to the analysis of biomolecular simlation data",
2929
"longdesc": ""
3030
},
3131
"aiida-lysozyme-workshop": {
32-
"latest": "2026-02-23",
32+
"latest": "2026-03-02",
3333
"name": "aiida-gromacs - Lysozyme MD simulation tutorial",
3434
"category": "setup",
3535
"shortdesc": "Data provenance tools demonstrated with Justin Lemkul's lysozyme in water simulation tutorial.",
3636
"longdesc": ""
3737
},
3838
"basic-analysis-workshop": {
39-
"latest": "2026-02-23",
39+
"latest": "2026-03-02",
4040
"name": "Introducing Basic Analysis",
4141
"category": "analysis",
4242
"shortdesc": "In this course we will explore some of the issues in simulation preparation and analysis that can trip up the unwary, and how to avoid them.",
4343
"longdesc": ""
4444
},
4545
"equilibration-workshop": {
46-
"latest": "2026-02-23",
46+
"latest": "2026-03-02",
4747
"name": "An Introduction to Equilibration",
4848
"category": "setup",
4949
"shortdesc": "This course looks at one of the most common methods for assessing equilibration: the calculation of RMSDs. It may be a common approach, but is it a good one? Maybe not.",
5050
"longdesc": ""
5151
},
5252
"ubiquitin-analysis-workshop": {
53-
"latest": "2026-02-23",
53+
"latest": "2026-03-02",
5454
"name": "Introduction to Analysis of Ubiquitin",
5555
"category": "analysis",
5656
"shortdesc": "This course illustrates the application of a number of Python-based tools to the analysis of the results from a short (1 nanosecond) simulation of ubiquitin, investigating the question, how similar is the MD trajectory to the crystal and NMR structures?",
5757
"longdesc": ""
5858
},
5959
"clustering-workshop": {
60-
"latest": "2026-02-23",
60+
"latest": "2026-03-02",
6161
"name": "An Introduction to Clustering",
6262
"category": "analysis",
6363
"shortdesc": "This course illustrates the application of a variety of clustering methods to an MD trajectory, comparing their performance.",
6464
"longdesc": ""
6565
},
6666
"aiida-gpcr-workshop": {
67-
"latest": "2026-02-23",
67+
"latest": "2026-03-02",
6868
"name": "aiida-gromacs - GPCR MD simulation tutorial",
6969
"category": "advanced",
7070
"shortdesc": "An advanced demonstration showing advanced GPCR workflow with full data provenance collection.",
7171
"longdesc": ""
7272
},
7373
"pca-workshop": {
74-
"latest": "2026-02-23",
74+
"latest": "2026-03-02",
7575
"name": "An Introduction to Principle Component Analysis",
7676
"category": "analysis",
7777
"shortdesc": "The aim of this course is to illustrate methods we can use to assess convergence and sampling in MD trajectories.",
7878
"longdesc": ""
7979
},
8080
"python-workshop": {
81-
"latest": "2026-02-23",
81+
"latest": "2026-03-02",
8282
"name": "An Introduction to Python Programming",
8383
"category": "coding",
8484
"shortdesc": "This course will introduce more intermediate features of Python that are useful for biomolecular modellers.",
8585
"longdesc": ""
8686
},
8787
"pdb2pqr-workshop": {
88-
"latest": "2026-02-23",
88+
"latest": "2026-03-02",
8989
"name": "An Introduction to PDB2PQR",
9090
"category": "setup",
9191
"shortdesc": "This short course illustrates the application of pdb2pqr to the analysis of the tautomeric and ionization states of residues in the structure of the cysteine protease cruzein (PDB code 2oz2) - the results may not be what you would have expected!",
9292
"longdesc": ""
9393
},
9494
"docking-workflow": {
95-
"latest": "2026-02-23",
95+
"latest": "2026-03-02",
9696
"name": "Introducing Docking Workflows",
9797
"category": "advanced",
9898
"shortdesc": "This course introduces docking tools and workflows.",
9999
"longdesc": ""
100100
},
101101
"qmmm-workshop": {
102-
"latest": "2026-02-23",
102+
"latest": "2026-03-02",
103103
"name": "Introducing QM/MM",
104104
"category": "advanced",
105105
"shortdesc": "The course will introduce non-specialists to the use of combined quantum mechanics/molecular mechanics (QM/MM) methods for modelling enzyme-catalysed reaction mechanisms.",
106106
"longdesc": ""
107107
},
108108
"mm-gbsa-workshop": {
109-
"latest": "2026-02-23",
109+
"latest": "2026-03-02",
110110
"name": "Analysing with MM-GBSA",
111111
"category": "analysis",
112112
"shortdesc": "This course walks through the process of perfprming a basic MM-GBSA analysis of a molecular dynamics simulation of a protein-ligand complex to estimate the ligand binding free energy.",
113113
"longdesc": ""
114114
},
115115
"protein-ml-workshop": {
116-
"latest": "2026-02-23",
116+
"latest": "2026-03-02",
117117
"name": "Protein Analysis with Machine Learning",
118118
"category": "analysis",
119119
"shortdesc": "This course introduces the application of Machine Learning methods (specifically, PCA and clustering) to the analysis of protein simulation data.",
120120
"longdesc": ""
121121
},
122122
"protein-analysis-workshop": {
123-
"latest": "2026-02-23",
123+
"latest": "2026-03-02",
124124
"name": "Introduction to the Analysis of Proteins",
125125
"category": "analysis",
126126
"shortdesc": "This course introduces the application of MDTraj to the analysis of protein simulation data.",
127127
"longdesc": ""
128128
},
129129
"protein-preparation-workshop": {
130-
"latest": "2026-02-23",
130+
"latest": "2026-03-02",
131131
"name": "Preparing Proteins for Simulation",
132132
"category": "setup",
133133
"shortdesc": "This course walks through the process of preparing a simple protein system for molecular dynamics simulation using Ambertools.",
134134
"longdesc": ""
135135
},
136136
"dna-workshop": {
137-
"latest": "2026-02-23",
137+
"latest": "2026-03-02",
138138
"name": "Running DNA Simulations",
139139
"category": "simulation",
140140
"shortdesc": "This course introduces tools for running simulations on DNA systems.",
141141
"longdesc": ""
142142
},
143143
"protein-simulation-workshop": {
144-
"latest": "2026-02-23",
144+
"latest": "2026-03-02",
145145
"name": "Running MD Simulations",
146146
"category": "simulation",
147147
"shortdesc": "This workshop demonstrates two approaches to running MD simulations on a simple protein system.",
148148
"longdesc": ""
149149
},
150150
"coarse-graining-workshop": {
151-
"latest": "2026-02-23",
151+
"latest": "2026-03-02",
152152
"name": "Introducing Coarse-Graining",
153153
"category": "advanced",
154154
"shortdesc": "This workshop introduces tools for setup and running coarse-grain simulations.",
155155
"longdesc": ""
156156
},
157157
"openff-workshop": {
158-
"latest": "2026-02-23",
158+
"latest": "2026-03-02",
159159
"name": "Introducing OpenForceField Tools",
160160
"category": "advanced",
161161
"shortdesc": "This workshop introduces the openforcefield tooling.",

0 commit comments

Comments
 (0)