Merge pull request #90 from CESNET/create-pull-request/usegalaxy.cz

Update all tools of usegalaxy.cz

Author: martenson

usegalaxy.cz/convert_formats.yml.lock

@@ -271,6 +271,7 @@ tools:
   revisions:
   - 0b663ca9a961
   - 18dbde5680c0
+  - 3a2d8de89c73
   - 85a38dffb93d
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats

usegalaxy.cz/dna_metabarcoding.yml.lock

@@ -35,6 +35,7 @@ tools:
   revisions:
   - 08d873cdd5f6
   - 12baadec7809
+  - 816cbd8f4e6e
   tool_panel_section_id: dna_metabarcoding
   tool_panel_section_label: DNA Metabarcoding
 - name: obi_uniq

usegalaxy.cz/get_data.yml.lock

@@ -66,6 +66,7 @@ tools:
   - 21a560af5913
   - 2e297d531259
   - 34758ab8aaa4
+  - 4edfc76f8a29
   - 9aaa46d45472
   tool_panel_section_id: get_data
   tool_panel_section_label: Get Data

usegalaxy.cz/graph_display_data.yml.lock

@@ -162,6 +162,7 @@ tools:
   - 5e08a1e22dbc
   - 83c573f2e73c
   - cfb0595f9842
+  - e4790edb4299
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: ggplot2_heatmap2

usegalaxy.cz/join__subtract_and_group.yml.lock

@@ -43,5 +43,6 @@ tools:
   - 562f3c677828
   - 61e2aa6bb55d
   - 746e8e4bf929
+  - d642efa5cbd7
   tool_panel_section_id: join__subtract_and_group
   tool_panel_section_label: Join, Subtract and Group

usegalaxy.cz/metagenomic_analysis.yml.lock

@@ -79,13 +79,15 @@ tools:
   owner: iuc
   revisions:
   - 1a6cdf55390f
+  - 56ff60ec416d
   - 6dee4abadccb
   - eca2e2e20436
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: extract_metaphlan_database
   owner: iuc
   revisions:
+  - 1fa07868c0f3
   - 6efa06ffbac8
   - b4c750fe0fe3
   - db58d5898fea
@@ -492,6 +494,7 @@ tools:
   - 0270541aaf46
   - 27250f92a01a
   - 3cc4a60615c0
+  - c3e2a0805600
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: metaphlan_hclust_heatmap
@@ -518,6 +521,7 @@ tools:
   owner: iuc
   revisions:
   - 25a5fa5f86a5
+  - 2c8db4bf8834
   - 892a0629e2ed
   - f93a61ef06cf
   tool_panel_section_id: metagenomic_analysis

usegalaxy.cz/phylogenetics.yml.lock

@@ -208,6 +208,7 @@ tools:
   - 2f1019071464
   - 8ad84c5753ea
   - c092a2f58013
+  - c12c7d0e067b
   tool_panel_section_id: phylogenetics
   tool_panel_section_label: Phylogenetics
 - name: nextclade

usegalaxy.cz/proteomics.yml.lock

@@ -1687,6 +1687,7 @@ tools:
   revisions:
   - 21a560af5913
   - 2e297d531259
+  - 4edfc76f8a29
   - 9aaa46d45472
   tool_panel_section_id: proteomics
   tool_panel_section_label: Proteomics

usegalaxy.cz/rna_analysis.yml.lock

@@ -965,6 +965,7 @@ tools:
 - name: cmsearch_deoverlap
   owner: rnateam
   revisions:
+  - 42c5bf8ed1b0
   - 54b16c794341
   - 874ad23526a0
   tool_panel_section_id: rna_analysis

usegalaxy.cz/sam_bam.yml.lock

@@ -14,6 +14,7 @@ tools:
 - name: samtools_coverage
   owner: iuc
   revisions:
+  - 5160be5d088f
   - ae36fab06bc2
   - c4ff13d2aab3
   - ddbd49b892e5
@@ -54,6 +55,7 @@ tools:
   owner: devteam
   revisions:
   - 3ed3e1146308
+  - a0d8e49a018c
   - fbc6c28a5b14
   - fe34990e5ce7
   - fefd89ab563c
@@ -62,6 +64,7 @@ tools:
 - name: samtools_mpileup
   owner: devteam
   revisions:
+  - 0668270db5ba
   - 32f6fffbc3e9
   - 7df230bec125
   - 9da0311ab1dd
@@ -77,6 +80,7 @@ tools:
 - name: samtools_slice_bam
   owner: devteam
   revisions:
+  - 32e29dd08b1a
   - 344fc91e1bfd
   - adc4ed59d82b
   - b8beef827165
@@ -89,6 +93,7 @@ tools:
   - 32dc5f781059
   - 48bbbcb692ce
   - 5826298f6a73
+  - 5ec526530725
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_reheader
@@ -98,6 +103,7 @@ tools:
   - 2d7f0d455ad4
   - 85e38b31e8b3
   - bb8cfc6f6e0c
+  - df41198e970c
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: qualimap_bamqc
@@ -134,6 +140,7 @@ tools:
   revisions:
   - 229ba92a3b55
   - 40fa6c240105
+  - 56fb540810ce
   - b5527cc104ab
   - ce32171c6d44
   tool_panel_section_id: sam_bam
@@ -143,12 +150,14 @@ tools:
   revisions:
   - 36677f429310
   - a7617eb92baf
+  - c8bc9d08b0e3
   - cae2794d2deb
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_fastx
   owner: iuc
   revisions:
+  - 491037bfc0d2
   - 9038311ed624
   - b3d99709fe1a
   - b906586a6596
@@ -158,6 +167,7 @@ tools:
   owner: iuc
   revisions:
   - 41e36c99a008
+  - 68a116f469db
   - c05afbeaf42d
   - d2df79922531
   tool_panel_section_id: sam_bam
@@ -168,12 +178,14 @@ tools:
   - 1ed8ed887035
   - 3a0efe14891f
   - 541082d03bef
+  - 57934e90e27c
   - e221fe58c2f5
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_idxstats
   owner: devteam
   revisions:
+  - 13aad5cb9be4
   - 5c25c98e2a88
   - 7def34e6cf4d
   - c9d9f721a568
@@ -189,6 +201,7 @@ tools:
 - name: samtools_split
   owner: devteam
   revisions:
+  - 3d9c6d1d0b9c
   - 818030fa6bbf
   - bcedabb53ddf
   tool_panel_section_id: sam_bam
@@ -200,6 +213,7 @@ tools:
   - 46c6639921f1
   - 6856f8a01905
   - 762f63d4e25d
+  - cc01c0658f6c
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_depth
@@ -208,11 +222,13 @@ tools:
   - 56faa6a57e50
   - '772919943459'
   - 971dc85e9441
+  - fb6d5ffc365f
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_sort
   owner: devteam
   revisions:
+  - 69dca890852c
   - 6c2c1836728b
   - 9ede25e390ff
   - d54a4df48867
@@ -237,6 +253,7 @@ tools:
   owner: devteam
   revisions:
   - 22c2ab33cec9
+  - 26a85f18dc69
   - 26b4f9f98aca
   - 3d5853a84711
   - 92ec40abcdcf
@@ -246,6 +263,7 @@ tools:
   owner: devteam
   revisions:
   - 1e5880498f52
+  - 2f901e9402dd
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: bamhash
@@ -293,6 +311,7 @@ tools:
   revisions:
   - 4967154b9859
   - 5f3ea90dc6ae
+  - 77889ed49dbc
   - f20b704ba069
   - f597cb9b33bf
   tool_panel_section_id: sam_bam
@@ -316,12 +335,14 @@ tools:
   - 30fdbaccb96b
   - 72b8a3614802
   - 73913bb77da3
+  - 8886b95d2956
   - cf1ffd88f895
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: bam_to_sam
   owner: devteam
   revisions:
+  - 132036f92aa3
   - 2b7acdca5fe1
   - 3c661e57a88f
   - 69aa7277b44c